miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23624 3' -52.1 NC_005261.1 + 113651 0.71 0.844443
Target:  5'- aCCAggagcGCCUGAUcgaCCUCUGCGCcgaccGCGCc -3'
miRNA:   3'- -GGU-----UGGACUGcaaGGAGACGUG-----UGCG- -5'
23624 3' -52.1 NC_005261.1 + 36922 0.71 0.836103
Target:  5'- -gGGCCggGACGUacUCCggggccCUGCGCugGCg -3'
miRNA:   3'- ggUUGGa-CUGCA--AGGa-----GACGUGugCG- -5'
23624 3' -52.1 NC_005261.1 + 5969 0.71 0.85258
Target:  5'- gCUAGCUcGGC--UCCUCUGC-CGCGCg -3'
miRNA:   3'- -GGUUGGaCUGcaAGGAGACGuGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 47386 0.7 0.890002
Target:  5'- aCAACCgucggGGCGgcgCCgccccccgUGCACACGCg -3'
miRNA:   3'- gGUUGGa----CUGCaa-GGag------ACGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 115337 0.7 0.890002
Target:  5'- --uACCggGACGUguaCUUCaUGCGCACGCu -3'
miRNA:   3'- gguUGGa-CUGCAa--GGAG-ACGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 82878 0.7 0.903345
Target:  5'- aCGGCgCUGGCGguggCCUC-GC-CGCGCg -3'
miRNA:   3'- gGUUG-GACUGCaa--GGAGaCGuGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 55370 0.69 0.93745
Target:  5'- cCCAGCCUGGCccgCCgccgCUGC-CGcCGCc -3'
miRNA:   3'- -GGUUGGACUGcaaGGa---GACGuGU-GCG- -5'
23624 3' -52.1 NC_005261.1 + 84913 0.69 0.92708
Target:  5'- cCCAcACCUccgGGCGggCCUCgGCcuCGCGCa -3'
miRNA:   3'- -GGU-UGGA---CUGCaaGGAGaCGu-GUGCG- -5'
23624 3' -52.1 NC_005261.1 + 75866 0.69 0.92152
Target:  5'- gCGGCCccGACGgcgCCguggGCGCGCGCa -3'
miRNA:   3'- gGUUGGa-CUGCaa-GGaga-CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 54877 0.69 0.93745
Target:  5'- aCGGCCgGAUGaugCgUCgGCGCGCGCg -3'
miRNA:   3'- gGUUGGaCUGCaa-GgAGaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 29738 0.69 0.93745
Target:  5'- gCGACCaGAagcUGUUCCUCcUGCagagccugcgGCGCGCg -3'
miRNA:   3'- gGUUGGaCU---GCAAGGAG-ACG----------UGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 62672 0.69 0.93239
Target:  5'- gCCAGCgccACG-UCCgccagCUGCACGCGCc -3'
miRNA:   3'- -GGUUGgacUGCaAGGa----GACGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 4119 0.69 0.92708
Target:  5'- aCGAgCUGugGccccggcagCC-CUGCACGCGCc -3'
miRNA:   3'- gGUUgGACugCaa-------GGaGACGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 101512 0.69 0.93239
Target:  5'- gCCAGCCcGGCGc-CCUCgucgcgGuCGCGCGCc -3'
miRNA:   3'- -GGUUGGaCUGCaaGGAGa-----C-GUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 46509 0.69 0.935958
Target:  5'- gCAGCCcGGCGUcgcgcagcaccgccUCCgCUGCGCGCugGCa -3'
miRNA:   3'- gGUUGGaCUGCA--------------AGGaGACGUGUG--CG- -5'
23624 3' -52.1 NC_005261.1 + 96281 0.69 0.93745
Target:  5'- aCGACgCUGGCGcggcuucggCCUCgGCcGCGCGCa -3'
miRNA:   3'- gGUUG-GACUGCaa-------GGAGaCG-UGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 102812 0.69 0.92152
Target:  5'- cCCAGCCgccGCGcgCCggUCUGCGCcucGCGCc -3'
miRNA:   3'- -GGUUGGac-UGCaaGG--AGACGUG---UGCG- -5'
23624 3' -52.1 NC_005261.1 + 10348 0.69 0.92708
Target:  5'- aCCGGCUcGGCGUUUgUCacgGCcgACACGCg -3'
miRNA:   3'- -GGUUGGaCUGCAAGgAGa--CG--UGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 89487 0.68 0.946825
Target:  5'- gCUGGCCuucaUGACGUUCCUCaagcaGUACuCGCc -3'
miRNA:   3'- -GGUUGG----ACUGCAAGGAGa----CGUGuGCG- -5'
23624 3' -52.1 NC_005261.1 + 38941 0.68 0.942261
Target:  5'- gCGGCCgGGCGggCCgcgGCGCGCGg -3'
miRNA:   3'- gGUUGGaCUGCaaGGagaCGUGUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.