miRNA display CGI


Results 61 - 80 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23624 3' -52.1 NC_005261.1 + 110326 0.67 0.969213
Target:  5'- aCCGcgccGCCgcgGACGcg---CUGCGCGCGCa -3'
miRNA:   3'- -GGU----UGGa--CUGCaaggaGACGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 56317 0.67 0.969213
Target:  5'- gCCugcuaCUGACGagCCUg-GCGCGCGCc -3'
miRNA:   3'- -GGuug--GACUGCaaGGAgaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 84574 0.67 0.966053
Target:  5'- aCGGCCccguaGACGgcCgUCUGCGCcaGCGCg -3'
miRNA:   3'- gGUUGGa----CUGCaaGgAGACGUG--UGCG- -5'
23624 3' -52.1 NC_005261.1 + 86768 0.67 0.966053
Target:  5'- uCCAggcACgUGACG-UCCUCgucgaACACGCu -3'
miRNA:   3'- -GGU---UGgACUGCaAGGAGacg--UGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 70686 0.67 0.966053
Target:  5'- uCCAGCCaGGCG-UCCagCgcgGCcCGCGCg -3'
miRNA:   3'- -GGUUGGaCUGCaAGGa-Ga--CGuGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 32543 0.67 0.962673
Target:  5'- cCCGGCCgcgGcGCGggCCg--GCGCGCGUg -3'
miRNA:   3'- -GGUUGGa--C-UGCaaGGagaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 104281 0.67 0.972156
Target:  5'- gCGGCUgcGCGggCCUCgcaggcccGCGCGCGCu -3'
miRNA:   3'- gGUUGGacUGCaaGGAGa-------CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 97906 0.67 0.968907
Target:  5'- aCCGucugggcGCCgGGCGUcCCcgCUGUACugGCc -3'
miRNA:   3'- -GGU-------UGGaCUGCAaGGa-GACGUGugCG- -5'
23624 3' -52.1 NC_005261.1 + 104719 0.66 0.985709
Target:  5'- aCGGCCgagGGCGcgucgugCCgcgUGCGCGCGCc -3'
miRNA:   3'- gGUUGGa--CUGCaa-----GGag-ACGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 82639 0.66 0.987359
Target:  5'- gCCGACaUGugGUgg-UCguaGCACGCGCg -3'
miRNA:   3'- -GGUUGgACugCAaggAGa--CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 77061 0.66 0.985709
Target:  5'- aCCGcGCCUGGcCGgugCCgcgCgagGCGCugGCg -3'
miRNA:   3'- -GGU-UGGACU-GCaa-GGa--Ga--CGUGugCG- -5'
23624 3' -52.1 NC_005261.1 + 24598 0.66 0.9839
Target:  5'- cCCAGuCCcGGCGgcCCUCUcgGCACAC-Ca -3'
miRNA:   3'- -GGUU-GGaCUGCaaGGAGA--CGUGUGcG- -5'
23624 3' -52.1 NC_005261.1 + 93832 0.66 0.982734
Target:  5'- gCAGCCgccgGGCGgcgccgccgagcagUCCaCgagGCGCGCGCa -3'
miRNA:   3'- gGUUGGa---CUGCa-------------AGGaGa--CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 128556 0.66 0.981921
Target:  5'- cCCGACucgCUGGCGcUCUggggcccggUUGCGCugGCg -3'
miRNA:   3'- -GGUUG---GACUGCaAGGa--------GACGUGugCG- -5'
23624 3' -52.1 NC_005261.1 + 88196 0.66 0.981921
Target:  5'- gCCGGCgaGGCGggCCgcgCcgGCaaGCGCGCg -3'
miRNA:   3'- -GGUUGgaCUGCaaGGa--Ga-CG--UGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 116386 0.66 0.9839
Target:  5'- gCCGAUC-GGgGggCCgcgUGCACGCGCa -3'
miRNA:   3'- -GGUUGGaCUgCaaGGag-ACGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 38374 0.66 0.979766
Target:  5'- gCGGCCgggaaGCGgcaCCUCgUGCugACGCa -3'
miRNA:   3'- gGUUGGac---UGCaa-GGAG-ACGugUGCG- -5'
23624 3' -52.1 NC_005261.1 + 112889 0.66 0.977426
Target:  5'- gCAACCUGGCcagcgUCaacCUGC-CGCGCu -3'
miRNA:   3'- gGUUGGACUGca---AGga-GACGuGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 75032 0.66 0.976686
Target:  5'- aCCAcCCUGGCGgccgaCCUgCUGgccaugguguacacCGCGCGCg -3'
miRNA:   3'- -GGUuGGACUGCaa---GGA-GAC--------------GUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 112057 0.66 0.977426
Target:  5'- gCCGGCCUucgGGCGUgcCCUCgucgGCGaggGCGCc -3'
miRNA:   3'- -GGUUGGA---CUGCAa-GGAGa---CGUg--UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.