miRNA display CGI


Results 81 - 94 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23624 3' -52.1 NC_005261.1 + 93832 0.66 0.982734
Target:  5'- gCAGCCgccgGGCGgcgccgccgagcagUCCaCgagGCGCGCGCa -3'
miRNA:   3'- gGUUGGa---CUGCa-------------AGGaGa--CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 128556 0.66 0.981921
Target:  5'- cCCGACucgCUGGCGcUCUggggcccggUUGCGCugGCg -3'
miRNA:   3'- -GGUUG---GACUGCaAGGa--------GACGUGugCG- -5'
23624 3' -52.1 NC_005261.1 + 112057 0.66 0.977426
Target:  5'- gCCGGCCUucgGGCGUgcCCUCgucgGCGaggGCGCc -3'
miRNA:   3'- -GGUUGGA---CUGCAa-GGAGa---CGUg--UGCG- -5'
23624 3' -52.1 NC_005261.1 + 34015 0.66 0.977426
Target:  5'- aUCuGCCUcGACGUgaucaCCggcgCgGCGCGCGCg -3'
miRNA:   3'- -GGuUGGA-CUGCAa----GGa---GaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 112889 0.66 0.977426
Target:  5'- gCAACCUGGCcagcgUCaacCUGC-CGCGCu -3'
miRNA:   3'- gGUUGGACUGca---AGga-GACGuGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 38374 0.66 0.979766
Target:  5'- gCGGCCgggaaGCGgcaCCUCgUGCugACGCa -3'
miRNA:   3'- gGUUGGac---UGCaa-GGAG-ACGugUGCG- -5'
23624 3' -52.1 NC_005261.1 + 100852 0.66 0.979766
Target:  5'- gCGACCUGcGCGUcgaaggCCgccagaaGCGCGCGCa -3'
miRNA:   3'- gGUUGGAC-UGCAa-----GGaga----CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 57236 0.66 0.979766
Target:  5'- cUCAGCCccacGGCGaUCCgcgugccgCcGCACACGCu -3'
miRNA:   3'- -GGUUGGa---CUGCaAGGa-------GaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 79799 0.66 0.979766
Target:  5'- aCGGCCaUGGCGUcCCccaacaUGCGCGCGg -3'
miRNA:   3'- gGUUGG-ACUGCAaGGag----ACGUGUGCg -5'
23624 3' -52.1 NC_005261.1 + 110209 0.66 0.979766
Target:  5'- -aGGCCUGGCGcaaCCUCgGCG-ACGCc -3'
miRNA:   3'- ggUUGGACUGCaa-GGAGaCGUgUGCG- -5'
23624 3' -52.1 NC_005261.1 + 43490 0.66 0.981921
Target:  5'- -aGGCCUucgcGGCGgaCCUcCUGCGCuGCGCc -3'
miRNA:   3'- ggUUGGA----CUGCaaGGA-GACGUG-UGCG- -5'
23624 3' -52.1 NC_005261.1 + 66513 0.66 0.981921
Target:  5'- gCGACaUUGGCGgcgCCuUCUccagcaGCACGCGCa -3'
miRNA:   3'- gGUUG-GACUGCaa-GG-AGA------CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 88196 0.66 0.981921
Target:  5'- gCCGGCgaGGCGggCCgcgCcgGCaaGCGCGCg -3'
miRNA:   3'- -GGUUGgaCUGCaaGGa--Ga-CG--UGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 75032 0.66 0.976686
Target:  5'- aCCAcCCUGGCGgccgaCCUgCUGgccaugguguacacCGCGCGCg -3'
miRNA:   3'- -GGUuGGACUGCaa---GGA-GAC--------------GUGUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.