miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23624 3' -52.1 NC_005261.1 + 75904 1.14 0.003252
Target:  5'- gCCAACCUGACGUUCCUCUGCACACGCu -3'
miRNA:   3'- -GGUUGGACUGCAAGGAGACGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 75650 0.77 0.547133
Target:  5'- gCGGCCggcGCGUUCCUg-GCGCGCGCg -3'
miRNA:   3'- gGUUGGac-UGCAAGGAgaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 112717 0.76 0.630182
Target:  5'- -gGACCUGGCGUUCCUCgucGUcCGCaGCa -3'
miRNA:   3'- ggUUGGACUGCAAGGAGa--CGuGUG-CG- -5'
23624 3' -52.1 NC_005261.1 + 10016 0.74 0.703018
Target:  5'- cCCGACCgGGCGggCCUCgcgucggggGCGCuCGCu -3'
miRNA:   3'- -GGUUGGaCUGCaaGGAGa--------CGUGuGCG- -5'
23624 3' -52.1 NC_005261.1 + 106953 0.74 0.703018
Target:  5'- cUCGGCCcgGGCGcgcuccgCCUCgGCGCGCGCg -3'
miRNA:   3'- -GGUUGGa-CUGCaa-----GGAGaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 135721 0.74 0.723407
Target:  5'- cCCAGCCUGuacAUGUUCgUgaUGCugGCGCg -3'
miRNA:   3'- -GGUUGGAC---UGCAAGgAg-ACGugUGCG- -5'
23624 3' -52.1 NC_005261.1 + 14387 0.74 0.733483
Target:  5'- cCCGcaucGCCaGACGcuucucucagUUCCUCUcGCGCGCGCu -3'
miRNA:   3'- -GGU----UGGaCUGC----------AAGGAGA-CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 79040 0.72 0.791663
Target:  5'- cCCGcGCCcuUGGCGUcgUCCUUgaGCGCGCGCg -3'
miRNA:   3'- -GGU-UGG--ACUGCA--AGGAGa-CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 92941 0.72 0.800888
Target:  5'- gCAGCUgcccGGCGUcCCggacaaaggCUGCGCACGCg -3'
miRNA:   3'- gGUUGGa---CUGCAaGGa--------GACGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 69203 0.72 0.809954
Target:  5'- gCGGCCaacGACGUccUCCgggagCUGUGCGCGCu -3'
miRNA:   3'- gGUUGGa--CUGCA--AGGa----GACGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 51456 0.72 0.809954
Target:  5'- aUCAACCUGGcCGgcggUCUGCugGCGCu -3'
miRNA:   3'- -GGUUGGACU-GCaaggAGACGugUGCG- -5'
23624 3' -52.1 NC_005261.1 + 104572 0.72 0.809954
Target:  5'- cCCAGCgCUGAgGg----CUGCGCGCGCa -3'
miRNA:   3'- -GGUUG-GACUgCaaggaGACGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 117993 0.72 0.82757
Target:  5'- aCCGGCCUGACGgcggcggcgCUggacgCUGUcggacGCACGCg -3'
miRNA:   3'- -GGUUGGACUGCaa-------GGa----GACG-----UGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 89396 0.72 0.82757
Target:  5'- gCGACCUGcCGccggccUUCCUCgGCGCguGCGCg -3'
miRNA:   3'- gGUUGGACuGC------AAGGAGaCGUG--UGCG- -5'
23624 3' -52.1 NC_005261.1 + 36922 0.71 0.836103
Target:  5'- -gGGCCggGACGUacUCCggggccCUGCGCugGCg -3'
miRNA:   3'- ggUUGGa-CUGCA--AGGa-----GACGUGugCG- -5'
23624 3' -52.1 NC_005261.1 + 113651 0.71 0.844443
Target:  5'- aCCAggagcGCCUGAUcgaCCUCUGCGCcgaccGCGCc -3'
miRNA:   3'- -GGU-----UGGACUGcaaGGAGACGUG-----UGCG- -5'
23624 3' -52.1 NC_005261.1 + 5969 0.71 0.85258
Target:  5'- gCUAGCUcGGC--UCCUCUGC-CGCGCg -3'
miRNA:   3'- -GGUUGGaCUGcaAGGAGACGuGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 32223 0.71 0.860508
Target:  5'- gCCGGCCgcGGCGguggCCuUCUGCGCGgcCGCg -3'
miRNA:   3'- -GGUUGGa-CUGCaa--GG-AGACGUGU--GCG- -5'
23624 3' -52.1 NC_005261.1 + 58886 0.71 0.860508
Target:  5'- ---uCCgGGCGggCCUCgcagGCGCGCGCc -3'
miRNA:   3'- gguuGGaCUGCaaGGAGa---CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 106108 0.71 0.86822
Target:  5'- gUCGGCC-GGCGUcgCCg--GCGCGCGCg -3'
miRNA:   3'- -GGUUGGaCUGCAa-GGagaCGUGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.