miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23624 3' -52.1 NC_005261.1 + 79799 0.66 0.979766
Target:  5'- aCGGCCaUGGCGUcCCccaacaUGCGCGCGg -3'
miRNA:   3'- gGUUGG-ACUGCAaGGag----ACGUGUGCg -5'
23624 3' -52.1 NC_005261.1 + 110209 0.66 0.979766
Target:  5'- -aGGCCUGGCGcaaCCUCgGCG-ACGCc -3'
miRNA:   3'- ggUUGGACUGCaa-GGAGaCGUgUGCG- -5'
23624 3' -52.1 NC_005261.1 + 112889 0.66 0.977426
Target:  5'- gCAACCUGGCcagcgUCaacCUGC-CGCGCu -3'
miRNA:   3'- gGUUGGACUGca---AGga-GACGuGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 34015 0.66 0.977426
Target:  5'- aUCuGCCUcGACGUgaucaCCggcgCgGCGCGCGCg -3'
miRNA:   3'- -GGuUGGA-CUGCAa----GGa---GaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 112057 0.66 0.977426
Target:  5'- gCCGGCCUucgGGCGUgcCCUCgucgGCGaggGCGCc -3'
miRNA:   3'- -GGUUGGA---CUGCAa-GGAGa---CGUg--UGCG- -5'
23624 3' -52.1 NC_005261.1 + 75032 0.66 0.976686
Target:  5'- aCCAcCCUGGCGgccgaCCUgCUGgccaugguguacacCGCGCGCg -3'
miRNA:   3'- -GGUuGGACUGCaa---GGA-GAC--------------GUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 104281 0.67 0.972156
Target:  5'- gCGGCUgcGCGggCCUCgcaggcccGCGCGCGCu -3'
miRNA:   3'- gGUUGGacUGCaaGGAGa-------CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 126067 0.67 0.972156
Target:  5'- gCCAGCCgccCGccggCCUCgGCGgGCGCg -3'
miRNA:   3'- -GGUUGGacuGCaa--GGAGaCGUgUGCG- -5'
23624 3' -52.1 NC_005261.1 + 110326 0.67 0.969213
Target:  5'- aCCGcgccGCCgcgGACGcg---CUGCGCGCGCa -3'
miRNA:   3'- -GGU----UGGa--CUGCaaggaGACGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 56317 0.67 0.969213
Target:  5'- gCCugcuaCUGACGagCCUg-GCGCGCGCc -3'
miRNA:   3'- -GGuug--GACUGCaaGGAgaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 97906 0.67 0.968907
Target:  5'- aCCGucugggcGCCgGGCGUcCCcgCUGUACugGCc -3'
miRNA:   3'- -GGU-------UGGaCUGCAaGGa-GACGUGugCG- -5'
23624 3' -52.1 NC_005261.1 + 84574 0.67 0.966053
Target:  5'- aCGGCCccguaGACGgcCgUCUGCGCcaGCGCg -3'
miRNA:   3'- gGUUGGa----CUGCaaGgAGACGUG--UGCG- -5'
23624 3' -52.1 NC_005261.1 + 18423 0.67 0.966053
Target:  5'- cCCAGCgCaGACG-UCCUCgccggGCAgCGCGUu -3'
miRNA:   3'- -GGUUG-GaCUGCaAGGAGa----CGU-GUGCG- -5'
23624 3' -52.1 NC_005261.1 + 86768 0.67 0.966053
Target:  5'- uCCAggcACgUGACG-UCCUCgucgaACACGCu -3'
miRNA:   3'- -GGU---UGgACUGCaAGGAGacg--UGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 70686 0.67 0.966053
Target:  5'- uCCAGCCaGGCG-UCCagCgcgGCcCGCGCg -3'
miRNA:   3'- -GGUUGGaCUGCaAGGa-Ga--CGuGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 32543 0.67 0.962673
Target:  5'- cCCGGCCgcgGcGCGggCCg--GCGCGCGUg -3'
miRNA:   3'- -GGUUGGa--C-UGCaaGGagaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 3525 0.68 0.959064
Target:  5'- uCCAGCgC-GGCGgccgCCUCgGCGCGCaGCg -3'
miRNA:   3'- -GGUUG-GaCUGCaa--GGAGaCGUGUG-CG- -5'
23624 3' -52.1 NC_005261.1 + 112813 0.68 0.959064
Target:  5'- gCCGgggacGCgCUGACGggcuccaaCCUCUGCACggagaucgugcaGCGCg -3'
miRNA:   3'- -GGU-----UG-GACUGCaa------GGAGACGUG------------UGCG- -5'
23624 3' -52.1 NC_005261.1 + 40570 0.68 0.956788
Target:  5'- uCCAGCgccuccacgaacucgCUGACGUUCgUgUGCAgCACGg -3'
miRNA:   3'- -GGUUG---------------GACUGCAAGgAgACGU-GUGCg -5'
23624 3' -52.1 NC_005261.1 + 68260 0.68 0.955223
Target:  5'- aCuGCCUGGCGcgCCUgcGCcCGCGCg -3'
miRNA:   3'- gGuUGGACUGCaaGGAgaCGuGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.