miRNA display CGI


Results 1 - 20 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23624 3' -52.1 NC_005261.1 + 1822 0.68 0.942261
Target:  5'- -gAGCCgcGCGUaagcggCCUCgGCGCGCGCg -3'
miRNA:   3'- ggUUGGacUGCAa-----GGAGaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 3525 0.68 0.959064
Target:  5'- uCCAGCgC-GGCGgccgCCUCgGCGCGCaGCg -3'
miRNA:   3'- -GGUUG-GaCUGCaa--GGAGaCGUGUG-CG- -5'
23624 3' -52.1 NC_005261.1 + 4119 0.69 0.92708
Target:  5'- aCGAgCUGugGccccggcagCC-CUGCACGCGCc -3'
miRNA:   3'- gGUUgGACugCaa-------GGaGACGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 5969 0.71 0.85258
Target:  5'- gCUAGCUcGGC--UCCUCUGC-CGCGCg -3'
miRNA:   3'- -GGUUGGaCUGcaAGGAGACGuGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 7611 0.66 0.9839
Target:  5'- cCCGGCCgcugGAUcugCCUCUGCuGC-CGCc -3'
miRNA:   3'- -GGUUGGa---CUGcaaGGAGACG-UGuGCG- -5'
23624 3' -52.1 NC_005261.1 + 10016 0.74 0.703018
Target:  5'- cCCGACCgGGCGggCCUCgcgucggggGCGCuCGCu -3'
miRNA:   3'- -GGUUGGaCUGCaaGGAGa--------CGUGuGCG- -5'
23624 3' -52.1 NC_005261.1 + 10256 0.68 0.954826
Target:  5'- gCCGcggGCCUGGCGc-CUUCUGCccugaggACugGCg -3'
miRNA:   3'- -GGU---UGGACUGCaaGGAGACG-------UGugCG- -5'
23624 3' -52.1 NC_005261.1 + 10348 0.69 0.92708
Target:  5'- aCCGGCUcGGCGUUUgUCacgGCcgACACGCg -3'
miRNA:   3'- -GGUUGGaCUGCAAGgAGa--CG--UGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 11872 0.66 0.985709
Target:  5'- gUCAGCUgcggGGCGagCC-CgcccGCACGCGCg -3'
miRNA:   3'- -GGUUGGa---CUGCaaGGaGa---CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 14387 0.74 0.733483
Target:  5'- cCCGcaucGCCaGACGcuucucucagUUCCUCUcGCGCGCGCu -3'
miRNA:   3'- -GGU----UGGaCUGC----------AAGGAGA-CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 18423 0.67 0.966053
Target:  5'- cCCAGCgCaGACG-UCCUCgccggGCAgCGCGUu -3'
miRNA:   3'- -GGUUG-GaCUGCaAGGAGa----CGU-GUGCG- -5'
23624 3' -52.1 NC_005261.1 + 20768 0.68 0.942261
Target:  5'- gCCGACUUGuACGcgCCcgUCUucGCGCACGUc -3'
miRNA:   3'- -GGUUGGAC-UGCaaGG--AGA--CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 24598 0.66 0.9839
Target:  5'- cCCAGuCCcGGCGgcCCUCUcgGCACAC-Ca -3'
miRNA:   3'- -GGUU-GGaCUGCaaGGAGA--CGUGUGcG- -5'
23624 3' -52.1 NC_005261.1 + 29738 0.69 0.93745
Target:  5'- gCGACCaGAagcUGUUCCUCcUGCagagccugcgGCGCGCg -3'
miRNA:   3'- gGUUGGaCU---GCAAGGAG-ACG----------UGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 32223 0.71 0.860508
Target:  5'- gCCGGCCgcGGCGguggCCuUCUGCGCGgcCGCg -3'
miRNA:   3'- -GGUUGGa-CUGCaa--GG-AGACGUGU--GCG- -5'
23624 3' -52.1 NC_005261.1 + 32543 0.67 0.962673
Target:  5'- cCCGGCCgcgGcGCGggCCg--GCGCGCGUg -3'
miRNA:   3'- -GGUUGGa--C-UGCaaGGagaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 34015 0.66 0.977426
Target:  5'- aUCuGCCUcGACGUgaucaCCggcgCgGCGCGCGCg -3'
miRNA:   3'- -GGuUGGA-CUGCAa----GGa---GaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 36922 0.71 0.836103
Target:  5'- -gGGCCggGACGUacUCCggggccCUGCGCugGCg -3'
miRNA:   3'- ggUUGGa-CUGCA--AGGa-----GACGUGugCG- -5'
23624 3' -52.1 NC_005261.1 + 38374 0.66 0.979766
Target:  5'- gCGGCCgggaaGCGgcaCCUCgUGCugACGCa -3'
miRNA:   3'- gGUUGGac---UGCaa-GGAG-ACGugUGCG- -5'
23624 3' -52.1 NC_005261.1 + 38941 0.68 0.942261
Target:  5'- gCGGCCgGGCGggCCgcgGCGCGCGg -3'
miRNA:   3'- gGUUGGaCUGCaaGGagaCGUGUGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.