miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23624 3' -52.1 NC_005261.1 + 70821 0.71 0.875711
Target:  5'- gCGGCCccgGGCGcgCCg--GCGCGCGCg -3'
miRNA:   3'- gGUUGGa--CUGCaaGGagaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 75032 0.66 0.976686
Target:  5'- aCCAcCCUGGCGgccgaCCUgCUGgccaugguguacacCGCGCGCg -3'
miRNA:   3'- -GGUuGGACUGCaa---GGA-GAC--------------GUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 75650 0.77 0.547133
Target:  5'- gCGGCCggcGCGUUCCUg-GCGCGCGCg -3'
miRNA:   3'- gGUUGGac-UGCAAGGAgaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 75866 0.69 0.92152
Target:  5'- gCGGCCccGACGgcgCCguggGCGCGCGCa -3'
miRNA:   3'- gGUUGGa-CUGCaa-GGaga-CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 75904 1.14 0.003252
Target:  5'- gCCAACCUGACGUUCCUCUGCACACGCu -3'
miRNA:   3'- -GGUUGGACUGCAAGGAGACGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 77061 0.66 0.985709
Target:  5'- aCCGcGCCUGGcCGgugCCgcgCgagGCGCugGCg -3'
miRNA:   3'- -GGU-UGGACU-GCaa-GGa--Ga--CGUGugCG- -5'
23624 3' -52.1 NC_005261.1 + 79040 0.72 0.791663
Target:  5'- cCCGcGCCcuUGGCGUcgUCCUUgaGCGCGCGCg -3'
miRNA:   3'- -GGU-UGG--ACUGCA--AGGAGa-CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 79799 0.66 0.979766
Target:  5'- aCGGCCaUGGCGUcCCccaacaUGCGCGCGg -3'
miRNA:   3'- gGUUGG-ACUGCAaGGag----ACGUGUGCg -5'
23624 3' -52.1 NC_005261.1 + 82639 0.66 0.987359
Target:  5'- gCCGACaUGugGUgg-UCguaGCACGCGCg -3'
miRNA:   3'- -GGUUGgACugCAaggAGa--CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 82878 0.7 0.903345
Target:  5'- aCGGCgCUGGCGguggCCUC-GC-CGCGCg -3'
miRNA:   3'- gGUUG-GACUGCaa--GGAGaCGuGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 84128 0.68 0.955223
Target:  5'- gCAGCgggcggggucgCUGGCGggCCUCgGC-CACGCc -3'
miRNA:   3'- gGUUG-----------GACUGCaaGGAGaCGuGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 84574 0.67 0.966053
Target:  5'- aCGGCCccguaGACGgcCgUCUGCGCcaGCGCg -3'
miRNA:   3'- gGUUGGa----CUGCaaGgAGACGUG--UGCG- -5'
23624 3' -52.1 NC_005261.1 + 84913 0.69 0.92708
Target:  5'- cCCAcACCUccgGGCGggCCUCgGCcuCGCGCa -3'
miRNA:   3'- -GGU-UGGA---CUGCaaGGAGaCGu-GUGCG- -5'
23624 3' -52.1 NC_005261.1 + 86768 0.67 0.966053
Target:  5'- uCCAggcACgUGACG-UCCUCgucgaACACGCu -3'
miRNA:   3'- -GGU---UGgACUGCaAGGAGacg--UGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 88196 0.66 0.981921
Target:  5'- gCCGGCgaGGCGggCCgcgCcgGCaaGCGCGCg -3'
miRNA:   3'- -GGUUGgaCUGCaaGGa--Ga-CG--UGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 89094 0.68 0.951145
Target:  5'- gCGGCCcgGGCGcgCUg--GCGCGCGCg -3'
miRNA:   3'- gGUUGGa-CUGCaaGGagaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 89396 0.72 0.82757
Target:  5'- gCGACCUGcCGccggccUUCCUCgGCGCguGCGCg -3'
miRNA:   3'- gGUUGGACuGC------AAGGAGaCGUG--UGCG- -5'
23624 3' -52.1 NC_005261.1 + 89487 0.68 0.946825
Target:  5'- gCUGGCCuucaUGACGUUCCUCaagcaGUACuCGCc -3'
miRNA:   3'- -GGUUGG----ACUGCAAGGAGa----CGUGuGCG- -5'
23624 3' -52.1 NC_005261.1 + 92941 0.72 0.800888
Target:  5'- gCAGCUgcccGGCGUcCCggacaaaggCUGCGCACGCg -3'
miRNA:   3'- gGUUGGa---CUGCAaGGa--------GACGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 93257 0.66 0.987359
Target:  5'- uUCGACC-GGCGcgCCa--GCGCGCGCc -3'
miRNA:   3'- -GGUUGGaCUGCaaGGagaCGUGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.