miRNA display CGI


Results 61 - 80 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23624 3' -52.1 NC_005261.1 + 93832 0.66 0.982734
Target:  5'- gCAGCCgccgGGCGgcgccgccgagcagUCCaCgagGCGCGCGCa -3'
miRNA:   3'- gGUUGGa---CUGCa-------------AGGaGa--CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 94624 0.68 0.955223
Target:  5'- gCCGccGCC-GGCGccgUCgUCgGCGCGCGCg -3'
miRNA:   3'- -GGU--UGGaCUGCa--AGgAGaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 96281 0.69 0.93745
Target:  5'- aCGACgCUGGCGcggcuucggCCUCgGCcGCGCGCa -3'
miRNA:   3'- gGUUG-GACUGCaa-------GGAGaCG-UGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 97906 0.67 0.968907
Target:  5'- aCCGucugggcGCCgGGCGUcCCcgCUGUACugGCc -3'
miRNA:   3'- -GGU-------UGGaCUGCAaGGa-GACGUGugCG- -5'
23624 3' -52.1 NC_005261.1 + 100852 0.66 0.979766
Target:  5'- gCGACCUGcGCGUcgaaggCCgccagaaGCGCGCGCa -3'
miRNA:   3'- gGUUGGAC-UGCAa-----GGaga----CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 101512 0.69 0.93239
Target:  5'- gCCAGCCcGGCGc-CCUCgucgcgGuCGCGCGCc -3'
miRNA:   3'- -GGUUGGaCUGCaaGGAGa-----C-GUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 102455 0.68 0.951563
Target:  5'- cCCGGCCUcGGCGcgcaggcgccggaccUCCUCgGCGCGcCGCc -3'
miRNA:   3'- -GGUUGGA-CUGCa--------------AGGAGaCGUGU-GCG- -5'
23624 3' -52.1 NC_005261.1 + 102731 0.68 0.946825
Target:  5'- gCCcGCCgccagGGCGUUCUUCaggGCGCuugcCGCg -3'
miRNA:   3'- -GGuUGGa----CUGCAAGGAGa--CGUGu---GCG- -5'
23624 3' -52.1 NC_005261.1 + 102812 0.69 0.92152
Target:  5'- cCCAGCCgccGCGcgCCggUCUGCGCcucGCGCc -3'
miRNA:   3'- -GGUUGGac-UGCaaGG--AGACGUG---UGCG- -5'
23624 3' -52.1 NC_005261.1 + 104281 0.67 0.972156
Target:  5'- gCGGCUgcGCGggCCUCgcaggcccGCGCGCGCu -3'
miRNA:   3'- gGUUGGacUGCaaGGAGa-------CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 104572 0.72 0.809954
Target:  5'- cCCAGCgCUGAgGg----CUGCGCGCGCa -3'
miRNA:   3'- -GGUUG-GACUgCaaggaGACGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 104719 0.66 0.985709
Target:  5'- aCGGCCgagGGCGcgucgugCCgcgUGCGCGCGCc -3'
miRNA:   3'- gGUUGGa--CUGCaa-----GGag-ACGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 106108 0.71 0.86822
Target:  5'- gUCGGCC-GGCGUcgCCg--GCGCGCGCg -3'
miRNA:   3'- -GGUUGGaCUGCAa-GGagaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 106953 0.74 0.703018
Target:  5'- cUCGGCCcgGGCGcgcuccgCCUCgGCGCGCGCg -3'
miRNA:   3'- -GGUUGGa-CUGCaa-----GGAGaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 110209 0.66 0.979766
Target:  5'- -aGGCCUGGCGcaaCCUCgGCG-ACGCc -3'
miRNA:   3'- ggUUGGACUGCaa-GGAGaCGUgUGCG- -5'
23624 3' -52.1 NC_005261.1 + 110289 0.68 0.942261
Target:  5'- uCCuuCCUGGCGggCgC-CUGCGC-CGCc -3'
miRNA:   3'- -GGuuGGACUGCaaG-GaGACGUGuGCG- -5'
23624 3' -52.1 NC_005261.1 + 110326 0.67 0.969213
Target:  5'- aCCGcgccGCCgcgGACGcg---CUGCGCGCGCa -3'
miRNA:   3'- -GGU----UGGa--CUGCaaggaGACGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 110591 0.71 0.875711
Target:  5'- gCCGGCCUGcGCGUUCCUggacGUGgACGCc -3'
miRNA:   3'- -GGUUGGAC-UGCAAGGAga--CGUgUGCG- -5'
23624 3' -52.1 NC_005261.1 + 112057 0.66 0.977426
Target:  5'- gCCGGCCUucgGGCGUgcCCUCgucgGCGaggGCGCc -3'
miRNA:   3'- -GGUUGGA---CUGCAa-GGAGa---CGUg--UGCG- -5'
23624 3' -52.1 NC_005261.1 + 112717 0.76 0.630182
Target:  5'- -gGACCUGGCGUUCCUCgucGUcCGCaGCa -3'
miRNA:   3'- ggUUGGACUGCAAGGAGa--CGuGUG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.