Results 81 - 94 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23624 | 3' | -52.1 | NC_005261.1 | + | 112813 | 0.68 | 0.959064 |
Target: 5'- gCCGgggacGCgCUGACGggcuccaaCCUCUGCACggagaucgugcaGCGCg -3' miRNA: 3'- -GGU-----UG-GACUGCaa------GGAGACGUG------------UGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 112889 | 0.66 | 0.977426 |
Target: 5'- gCAACCUGGCcagcgUCaacCUGC-CGCGCu -3' miRNA: 3'- gGUUGGACUGca---AGga-GACGuGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 113533 | 0.68 | 0.946825 |
Target: 5'- gCCAGCCggcuCGgggCCg-UGCGCGCGCu -3' miRNA: 3'- -GGUUGGacu-GCaa-GGagACGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 113651 | 0.71 | 0.844443 |
Target: 5'- aCCAggagcGCCUGAUcgaCCUCUGCGCcgaccGCGCc -3' miRNA: 3'- -GGU-----UGGACUGcaaGGAGACGUG-----UGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 115337 | 0.7 | 0.890002 |
Target: 5'- --uACCggGACGUguaCUUCaUGCGCACGCu -3' miRNA: 3'- gguUGGa-CUGCAa--GGAG-ACGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 116386 | 0.66 | 0.9839 |
Target: 5'- gCCGAUC-GGgGggCCgcgUGCACGCGCa -3' miRNA: 3'- -GGUUGGaCUgCaaGGag-ACGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 117993 | 0.72 | 0.82757 |
Target: 5'- aCCGGCCUGACGgcggcggcgCUggacgCUGUcggacGCACGCg -3' miRNA: 3'- -GGUUGGACUGCaa-------GGa----GACG-----UGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 126067 | 0.67 | 0.972156 |
Target: 5'- gCCAGCCgccCGccggCCUCgGCGgGCGCg -3' miRNA: 3'- -GGUUGGacuGCaa--GGAGaCGUgUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 128556 | 0.66 | 0.981921 |
Target: 5'- cCCGACucgCUGGCGcUCUggggcccggUUGCGCugGCg -3' miRNA: 3'- -GGUUG---GACUGCaAGGa--------GACGUGugCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 131910 | 0.68 | 0.955223 |
Target: 5'- aCCcGCUgGACGggCUUUuugGCGCGCGCg -3' miRNA: 3'- -GGuUGGaCUGCaaGGAGa--CGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 132603 | 0.68 | 0.955223 |
Target: 5'- cCCGGCCcGGCGagCCgccaggggGCGCugGCg -3' miRNA: 3'- -GGUUGGaCUGCaaGGaga-----CGUGugCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 133023 | 0.68 | 0.946825 |
Target: 5'- gCCAcCCgcgGGCGcgCCaCcGCGCACGCa -3' miRNA: 3'- -GGUuGGa--CUGCaaGGaGaCGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 134193 | 0.68 | 0.951145 |
Target: 5'- -gGGCCUGGCGcggCUCgGCGCGCGg -3' miRNA: 3'- ggUUGGACUGCaagGAGaCGUGUGCg -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 135721 | 0.74 | 0.723407 |
Target: 5'- cCCAGCCUGuacAUGUUCgUgaUGCugGCGCg -3' miRNA: 3'- -GGUUGGAC---UGCAAGgAg-ACGugUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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