Results 21 - 40 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23624 | 3' | -52.1 | NC_005261.1 | + | 106953 | 0.74 | 0.703018 |
Target: 5'- cUCGGCCcgGGCGcgcuccgCCUCgGCGCGCGCg -3' miRNA: 3'- -GGUUGGa-CUGCaa-----GGAGaCGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 106108 | 0.71 | 0.86822 |
Target: 5'- gUCGGCC-GGCGUcgCCg--GCGCGCGCg -3' miRNA: 3'- -GGUUGGaCUGCAa-GGagaCGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 104719 | 0.66 | 0.985709 |
Target: 5'- aCGGCCgagGGCGcgucgugCCgcgUGCGCGCGCc -3' miRNA: 3'- gGUUGGa--CUGCaa-----GGag-ACGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 104572 | 0.72 | 0.809954 |
Target: 5'- cCCAGCgCUGAgGg----CUGCGCGCGCa -3' miRNA: 3'- -GGUUG-GACUgCaaggaGACGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 104281 | 0.67 | 0.972156 |
Target: 5'- gCGGCUgcGCGggCCUCgcaggcccGCGCGCGCu -3' miRNA: 3'- gGUUGGacUGCaaGGAGa-------CGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 102812 | 0.69 | 0.92152 |
Target: 5'- cCCAGCCgccGCGcgCCggUCUGCGCcucGCGCc -3' miRNA: 3'- -GGUUGGac-UGCaaGG--AGACGUG---UGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 102731 | 0.68 | 0.946825 |
Target: 5'- gCCcGCCgccagGGCGUUCUUCaggGCGCuugcCGCg -3' miRNA: 3'- -GGuUGGa----CUGCAAGGAGa--CGUGu---GCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 102455 | 0.68 | 0.951563 |
Target: 5'- cCCGGCCUcGGCGcgcaggcgccggaccUCCUCgGCGCGcCGCc -3' miRNA: 3'- -GGUUGGA-CUGCa--------------AGGAGaCGUGU-GCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 101512 | 0.69 | 0.93239 |
Target: 5'- gCCAGCCcGGCGc-CCUCgucgcgGuCGCGCGCc -3' miRNA: 3'- -GGUUGGaCUGCaaGGAGa-----C-GUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 100852 | 0.66 | 0.979766 |
Target: 5'- gCGACCUGcGCGUcgaaggCCgccagaaGCGCGCGCa -3' miRNA: 3'- gGUUGGAC-UGCAa-----GGaga----CGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 97906 | 0.67 | 0.968907 |
Target: 5'- aCCGucugggcGCCgGGCGUcCCcgCUGUACugGCc -3' miRNA: 3'- -GGU-------UGGaCUGCAaGGa-GACGUGugCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 96281 | 0.69 | 0.93745 |
Target: 5'- aCGACgCUGGCGcggcuucggCCUCgGCcGCGCGCa -3' miRNA: 3'- gGUUG-GACUGCaa-------GGAGaCG-UGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 94624 | 0.68 | 0.955223 |
Target: 5'- gCCGccGCC-GGCGccgUCgUCgGCGCGCGCg -3' miRNA: 3'- -GGU--UGGaCUGCa--AGgAGaCGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 93832 | 0.66 | 0.982734 |
Target: 5'- gCAGCCgccgGGCGgcgccgccgagcagUCCaCgagGCGCGCGCa -3' miRNA: 3'- gGUUGGa---CUGCa-------------AGGaGa--CGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 93257 | 0.66 | 0.987359 |
Target: 5'- uUCGACC-GGCGcgCCa--GCGCGCGCc -3' miRNA: 3'- -GGUUGGaCUGCaaGGagaCGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 92941 | 0.72 | 0.800888 |
Target: 5'- gCAGCUgcccGGCGUcCCggacaaaggCUGCGCACGCg -3' miRNA: 3'- gGUUGGa---CUGCAaGGa--------GACGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 89487 | 0.68 | 0.946825 |
Target: 5'- gCUGGCCuucaUGACGUUCCUCaagcaGUACuCGCc -3' miRNA: 3'- -GGUUGG----ACUGCAAGGAGa----CGUGuGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 89396 | 0.72 | 0.82757 |
Target: 5'- gCGACCUGcCGccggccUUCCUCgGCGCguGCGCg -3' miRNA: 3'- gGUUGGACuGC------AAGGAGaCGUG--UGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 89094 | 0.68 | 0.951145 |
Target: 5'- gCGGCCcgGGCGcgCUg--GCGCGCGCg -3' miRNA: 3'- gGUUGGa-CUGCaaGGagaCGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 88196 | 0.66 | 0.981921 |
Target: 5'- gCCGGCgaGGCGggCCgcgCcgGCaaGCGCGCg -3' miRNA: 3'- -GGUUGgaCUGCaaGGa--Ga-CG--UGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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