miRNA display CGI


Results 41 - 60 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23624 3' -52.1 NC_005261.1 + 86768 0.67 0.966053
Target:  5'- uCCAggcACgUGACG-UCCUCgucgaACACGCu -3'
miRNA:   3'- -GGU---UGgACUGCaAGGAGacg--UGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 84913 0.69 0.92708
Target:  5'- cCCAcACCUccgGGCGggCCUCgGCcuCGCGCa -3'
miRNA:   3'- -GGU-UGGA---CUGCaaGGAGaCGu-GUGCG- -5'
23624 3' -52.1 NC_005261.1 + 84574 0.67 0.966053
Target:  5'- aCGGCCccguaGACGgcCgUCUGCGCcaGCGCg -3'
miRNA:   3'- gGUUGGa----CUGCaaGgAGACGUG--UGCG- -5'
23624 3' -52.1 NC_005261.1 + 84128 0.68 0.955223
Target:  5'- gCAGCgggcggggucgCUGGCGggCCUCgGC-CACGCc -3'
miRNA:   3'- gGUUG-----------GACUGCaaGGAGaCGuGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 82878 0.7 0.903345
Target:  5'- aCGGCgCUGGCGguggCCUC-GC-CGCGCg -3'
miRNA:   3'- gGUUG-GACUGCaa--GGAGaCGuGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 82639 0.66 0.987359
Target:  5'- gCCGACaUGugGUgg-UCguaGCACGCGCg -3'
miRNA:   3'- -GGUUGgACugCAaggAGa--CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 79799 0.66 0.979766
Target:  5'- aCGGCCaUGGCGUcCCccaacaUGCGCGCGg -3'
miRNA:   3'- gGUUGG-ACUGCAaGGag----ACGUGUGCg -5'
23624 3' -52.1 NC_005261.1 + 79040 0.72 0.791663
Target:  5'- cCCGcGCCcuUGGCGUcgUCCUUgaGCGCGCGCg -3'
miRNA:   3'- -GGU-UGG--ACUGCA--AGGAGa-CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 77061 0.66 0.985709
Target:  5'- aCCGcGCCUGGcCGgugCCgcgCgagGCGCugGCg -3'
miRNA:   3'- -GGU-UGGACU-GCaa-GGa--Ga--CGUGugCG- -5'
23624 3' -52.1 NC_005261.1 + 75904 1.14 0.003252
Target:  5'- gCCAACCUGACGUUCCUCUGCACACGCu -3'
miRNA:   3'- -GGUUGGACUGCAAGGAGACGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 75866 0.69 0.92152
Target:  5'- gCGGCCccGACGgcgCCguggGCGCGCGCa -3'
miRNA:   3'- gGUUGGa-CUGCaa-GGaga-CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 75650 0.77 0.547133
Target:  5'- gCGGCCggcGCGUUCCUg-GCGCGCGCg -3'
miRNA:   3'- gGUUGGac-UGCAAGGAgaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 75032 0.66 0.976686
Target:  5'- aCCAcCCUGGCGgccgaCCUgCUGgccaugguguacacCGCGCGCg -3'
miRNA:   3'- -GGUuGGACUGCaa---GGA-GAC--------------GUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 70821 0.71 0.875711
Target:  5'- gCGGCCccgGGCGcgCCg--GCGCGCGCg -3'
miRNA:   3'- gGUUGGa--CUGCaaGGagaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 70686 0.67 0.966053
Target:  5'- uCCAGCCaGGCG-UCCagCgcgGCcCGCGCg -3'
miRNA:   3'- -GGUUGGaCUGCaAGGa-Ga--CGuGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 69203 0.72 0.809954
Target:  5'- gCGGCCaacGACGUccUCCgggagCUGUGCGCGCu -3'
miRNA:   3'- gGUUGGa--CUGCA--AGGa----GACGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 68294 0.71 0.875711
Target:  5'- cCCGGCCgcgGGCGcggaCCUCUGCgGC-CGCu -3'
miRNA:   3'- -GGUUGGa--CUGCaa--GGAGACG-UGuGCG- -5'
23624 3' -52.1 NC_005261.1 + 68260 0.68 0.955223
Target:  5'- aCuGCCUGGCGcgCCUgcGCcCGCGCg -3'
miRNA:   3'- gGuUGGACUGCaaGGAgaCGuGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 66513 0.66 0.981921
Target:  5'- gCGACaUUGGCGgcgCCuUCUccagcaGCACGCGCa -3'
miRNA:   3'- gGUUG-GACUGCaa-GG-AGA------CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 62672 0.69 0.93239
Target:  5'- gCCAGCgccACG-UCCgccagCUGCACGCGCc -3'
miRNA:   3'- -GGUUGgacUGCaAGGa----GACGUGUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.