miRNA display CGI


Results 61 - 80 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23624 3' -52.1 NC_005261.1 + 58886 0.71 0.860508
Target:  5'- ---uCCgGGCGggCCUCgcagGCGCGCGCc -3'
miRNA:   3'- gguuGGaCUGCaaGGAGa---CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 57236 0.66 0.979766
Target:  5'- cUCAGCCccacGGCGaUCCgcgugccgCcGCACACGCu -3'
miRNA:   3'- -GGUUGGa---CUGCaAGGa-------GaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 56317 0.67 0.969213
Target:  5'- gCCugcuaCUGACGagCCUg-GCGCGCGCc -3'
miRNA:   3'- -GGuug--GACUGCaaGGAgaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 55370 0.69 0.93745
Target:  5'- cCCAGCCUGGCccgCCgccgCUGC-CGcCGCc -3'
miRNA:   3'- -GGUUGGACUGcaaGGa---GACGuGU-GCG- -5'
23624 3' -52.1 NC_005261.1 + 54877 0.69 0.93745
Target:  5'- aCGGCCgGAUGaugCgUCgGCGCGCGCg -3'
miRNA:   3'- gGUUGGaCUGCaa-GgAGaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 53324 0.66 0.9839
Target:  5'- -aGGCCgcaGGUGUgcgCCUCUGCGCcCGCc -3'
miRNA:   3'- ggUUGGa--CUGCAa--GGAGACGUGuGCG- -5'
23624 3' -52.1 NC_005261.1 + 51456 0.72 0.809954
Target:  5'- aUCAACCUGGcCGgcggUCUGCugGCGCu -3'
miRNA:   3'- -GGUUGGACU-GCaaggAGACGugUGCG- -5'
23624 3' -52.1 NC_005261.1 + 51327 0.66 0.987359
Target:  5'- gCCGccGCCUu-CGUcgggcUCUUCUGCAC-CGCu -3'
miRNA:   3'- -GGU--UGGAcuGCA-----AGGAGACGUGuGCG- -5'
23624 3' -52.1 NC_005261.1 + 51285 0.66 0.987359
Target:  5'- gCCGuCCUGgccGCGgccaccuaCCUC-GCGCACGCc -3'
miRNA:   3'- -GGUuGGAC---UGCaa------GGAGaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 47386 0.7 0.890002
Target:  5'- aCAACCgucggGGCGgcgCCgccccccgUGCACACGCg -3'
miRNA:   3'- gGUUGGa----CUGCaa-GGag------ACGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 46509 0.69 0.935958
Target:  5'- gCAGCCcGGCGUcgcgcagcaccgccUCCgCUGCGCGCugGCa -3'
miRNA:   3'- gGUUGGaCUGCA--------------AGGaGACGUGUG--CG- -5'
23624 3' -52.1 NC_005261.1 + 43704 0.66 0.987359
Target:  5'- cCUGGCCUGccACGcgCUgcgCgaGCACGCGCg -3'
miRNA:   3'- -GGUUGGAC--UGCaaGGa--Ga-CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 43490 0.66 0.981921
Target:  5'- -aGGCCUucgcGGCGgaCCUcCUGCGCuGCGCc -3'
miRNA:   3'- ggUUGGA----CUGCaaGGA-GACGUG-UGCG- -5'
23624 3' -52.1 NC_005261.1 + 40570 0.68 0.956788
Target:  5'- uCCAGCgccuccacgaacucgCUGACGUUCgUgUGCAgCACGg -3'
miRNA:   3'- -GGUUG---------------GACUGCAAGgAgACGU-GUGCg -5'
23624 3' -52.1 NC_005261.1 + 38941 0.68 0.942261
Target:  5'- gCGGCCgGGCGggCCgcgGCGCGCGg -3'
miRNA:   3'- gGUUGGaCUGCaaGGagaCGUGUGCg -5'
23624 3' -52.1 NC_005261.1 + 38374 0.66 0.979766
Target:  5'- gCGGCCgggaaGCGgcaCCUCgUGCugACGCa -3'
miRNA:   3'- gGUUGGac---UGCaa-GGAG-ACGugUGCG- -5'
23624 3' -52.1 NC_005261.1 + 36922 0.71 0.836103
Target:  5'- -gGGCCggGACGUacUCCggggccCUGCGCugGCg -3'
miRNA:   3'- ggUUGGa-CUGCA--AGGa-----GACGUGugCG- -5'
23624 3' -52.1 NC_005261.1 + 34015 0.66 0.977426
Target:  5'- aUCuGCCUcGACGUgaucaCCggcgCgGCGCGCGCg -3'
miRNA:   3'- -GGuUGGA-CUGCAa----GGa---GaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 32543 0.67 0.962673
Target:  5'- cCCGGCCgcgGcGCGggCCg--GCGCGCGUg -3'
miRNA:   3'- -GGUUGGa--C-UGCaaGGagaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 32223 0.71 0.860508
Target:  5'- gCCGGCCgcGGCGguggCCuUCUGCGCGgcCGCg -3'
miRNA:   3'- -GGUUGGa-CUGCaa--GG-AGACGUGU--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.