Results 41 - 60 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23624 | 3' | -52.1 | NC_005261.1 | + | 104719 | 0.66 | 0.985709 |
Target: 5'- aCGGCCgagGGCGcgucgugCCgcgUGCGCGCGCc -3' miRNA: 3'- gGUUGGa--CUGCaa-----GGag-ACGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 51285 | 0.66 | 0.987359 |
Target: 5'- gCCGuCCUGgccGCGgccaccuaCCUC-GCGCACGCc -3' miRNA: 3'- -GGUuGGAC---UGCaa------GGAGaCGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 51327 | 0.66 | 0.987359 |
Target: 5'- gCCGccGCCUu-CGUcgggcUCUUCUGCAC-CGCu -3' miRNA: 3'- -GGU--UGGAcuGCA-----AGGAGACGUGuGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 82639 | 0.66 | 0.987359 |
Target: 5'- gCCGACaUGugGUgg-UCguaGCACGCGCg -3' miRNA: 3'- -GGUUGgACugCAaggAGa--CGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 93257 | 0.66 | 0.987359 |
Target: 5'- uUCGACC-GGCGcgCCa--GCGCGCGCc -3' miRNA: 3'- -GGUUGGaCUGCaaGGagaCGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 88196 | 0.66 | 0.981921 |
Target: 5'- gCCGGCgaGGCGggCCgcgCcgGCaaGCGCGCg -3' miRNA: 3'- -GGUUGgaCUGCaaGGa--Ga-CG--UGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 66513 | 0.66 | 0.981921 |
Target: 5'- gCGACaUUGGCGgcgCCuUCUccagcaGCACGCGCa -3' miRNA: 3'- gGUUG-GACUGCaa-GG-AGA------CGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 110326 | 0.67 | 0.969213 |
Target: 5'- aCCGcgccGCCgcgGACGcg---CUGCGCGCGCa -3' miRNA: 3'- -GGU----UGGa--CUGCaaggaGACGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 126067 | 0.67 | 0.972156 |
Target: 5'- gCCAGCCgccCGccggCCUCgGCGgGCGCg -3' miRNA: 3'- -GGUUGGacuGCaa--GGAGaCGUgUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 104281 | 0.67 | 0.972156 |
Target: 5'- gCGGCUgcGCGggCCUCgcaggcccGCGCGCGCu -3' miRNA: 3'- gGUUGGacUGCaaGGAGa-------CGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 75032 | 0.66 | 0.976686 |
Target: 5'- aCCAcCCUGGCGgccgaCCUgCUGgccaugguguacacCGCGCGCg -3' miRNA: 3'- -GGUuGGACUGCaa---GGA-GAC--------------GUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 112057 | 0.66 | 0.977426 |
Target: 5'- gCCGGCCUucgGGCGUgcCCUCgucgGCGaggGCGCc -3' miRNA: 3'- -GGUUGGA---CUGCAa-GGAGa---CGUg--UGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 34015 | 0.66 | 0.977426 |
Target: 5'- aUCuGCCUcGACGUgaucaCCggcgCgGCGCGCGCg -3' miRNA: 3'- -GGuUGGA-CUGCAa----GGa---GaCGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 112889 | 0.66 | 0.977426 |
Target: 5'- gCAACCUGGCcagcgUCaacCUGC-CGCGCu -3' miRNA: 3'- gGUUGGACUGca---AGga-GACGuGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 38374 | 0.66 | 0.979766 |
Target: 5'- gCGGCCgggaaGCGgcaCCUCgUGCugACGCa -3' miRNA: 3'- gGUUGGac---UGCaa-GGAG-ACGugUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 100852 | 0.66 | 0.979766 |
Target: 5'- gCGACCUGcGCGUcgaaggCCgccagaaGCGCGCGCa -3' miRNA: 3'- gGUUGGAC-UGCAa-----GGaga----CGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 57236 | 0.66 | 0.979766 |
Target: 5'- cUCAGCCccacGGCGaUCCgcgugccgCcGCACACGCu -3' miRNA: 3'- -GGUUGGa---CUGCaAGGa-------GaCGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 79799 | 0.66 | 0.979766 |
Target: 5'- aCGGCCaUGGCGUcCCccaacaUGCGCGCGg -3' miRNA: 3'- gGUUGG-ACUGCAaGGag----ACGUGUGCg -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 110209 | 0.66 | 0.979766 |
Target: 5'- -aGGCCUGGCGcaaCCUCgGCG-ACGCc -3' miRNA: 3'- ggUUGGACUGCaa-GGAGaCGUgUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 43490 | 0.66 | 0.981921 |
Target: 5'- -aGGCCUucgcGGCGgaCCUcCUGCGCuGCGCc -3' miRNA: 3'- ggUUGGA----CUGCaaGGA-GACGUG-UGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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