miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23624 3' -52.1 NC_005261.1 + 104719 0.66 0.985709
Target:  5'- aCGGCCgagGGCGcgucgugCCgcgUGCGCGCGCc -3'
miRNA:   3'- gGUUGGa--CUGCaa-----GGag-ACGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 51285 0.66 0.987359
Target:  5'- gCCGuCCUGgccGCGgccaccuaCCUC-GCGCACGCc -3'
miRNA:   3'- -GGUuGGAC---UGCaa------GGAGaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 51327 0.66 0.987359
Target:  5'- gCCGccGCCUu-CGUcgggcUCUUCUGCAC-CGCu -3'
miRNA:   3'- -GGU--UGGAcuGCA-----AGGAGACGUGuGCG- -5'
23624 3' -52.1 NC_005261.1 + 82639 0.66 0.987359
Target:  5'- gCCGACaUGugGUgg-UCguaGCACGCGCg -3'
miRNA:   3'- -GGUUGgACugCAaggAGa--CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 93257 0.66 0.987359
Target:  5'- uUCGACC-GGCGcgCCa--GCGCGCGCc -3'
miRNA:   3'- -GGUUGGaCUGCaaGGagaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 88196 0.66 0.981921
Target:  5'- gCCGGCgaGGCGggCCgcgCcgGCaaGCGCGCg -3'
miRNA:   3'- -GGUUGgaCUGCaaGGa--Ga-CG--UGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 66513 0.66 0.981921
Target:  5'- gCGACaUUGGCGgcgCCuUCUccagcaGCACGCGCa -3'
miRNA:   3'- gGUUG-GACUGCaa-GG-AGA------CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 110326 0.67 0.969213
Target:  5'- aCCGcgccGCCgcgGACGcg---CUGCGCGCGCa -3'
miRNA:   3'- -GGU----UGGa--CUGCaaggaGACGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 126067 0.67 0.972156
Target:  5'- gCCAGCCgccCGccggCCUCgGCGgGCGCg -3'
miRNA:   3'- -GGUUGGacuGCaa--GGAGaCGUgUGCG- -5'
23624 3' -52.1 NC_005261.1 + 104281 0.67 0.972156
Target:  5'- gCGGCUgcGCGggCCUCgcaggcccGCGCGCGCu -3'
miRNA:   3'- gGUUGGacUGCaaGGAGa-------CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 75032 0.66 0.976686
Target:  5'- aCCAcCCUGGCGgccgaCCUgCUGgccaugguguacacCGCGCGCg -3'
miRNA:   3'- -GGUuGGACUGCaa---GGA-GAC--------------GUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 112057 0.66 0.977426
Target:  5'- gCCGGCCUucgGGCGUgcCCUCgucgGCGaggGCGCc -3'
miRNA:   3'- -GGUUGGA---CUGCAa-GGAGa---CGUg--UGCG- -5'
23624 3' -52.1 NC_005261.1 + 34015 0.66 0.977426
Target:  5'- aUCuGCCUcGACGUgaucaCCggcgCgGCGCGCGCg -3'
miRNA:   3'- -GGuUGGA-CUGCAa----GGa---GaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 112889 0.66 0.977426
Target:  5'- gCAACCUGGCcagcgUCaacCUGC-CGCGCu -3'
miRNA:   3'- gGUUGGACUGca---AGga-GACGuGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 38374 0.66 0.979766
Target:  5'- gCGGCCgggaaGCGgcaCCUCgUGCugACGCa -3'
miRNA:   3'- gGUUGGac---UGCaa-GGAG-ACGugUGCG- -5'
23624 3' -52.1 NC_005261.1 + 100852 0.66 0.979766
Target:  5'- gCGACCUGcGCGUcgaaggCCgccagaaGCGCGCGCa -3'
miRNA:   3'- gGUUGGAC-UGCAa-----GGaga----CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 57236 0.66 0.979766
Target:  5'- cUCAGCCccacGGCGaUCCgcgugccgCcGCACACGCu -3'
miRNA:   3'- -GGUUGGa---CUGCaAGGa-------GaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 79799 0.66 0.979766
Target:  5'- aCGGCCaUGGCGUcCCccaacaUGCGCGCGg -3'
miRNA:   3'- gGUUGG-ACUGCAaGGag----ACGUGUGCg -5'
23624 3' -52.1 NC_005261.1 + 110209 0.66 0.979766
Target:  5'- -aGGCCUGGCGcaaCCUCgGCG-ACGCc -3'
miRNA:   3'- ggUUGGACUGCaa-GGAGaCGUgUGCG- -5'
23624 3' -52.1 NC_005261.1 + 43490 0.66 0.981921
Target:  5'- -aGGCCUucgcGGCGgaCCUcCUGCGCuGCGCc -3'
miRNA:   3'- ggUUGGA----CUGCaaGGA-GACGUG-UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.