miRNA display CGI


Results 21 - 40 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23625 3' -65.7 NC_005261.1 + 129800 0.67 0.379227
Target:  5'- uCGCCuccgcgcuCGCGCCcgcgCCCUGCGCCc-GGAu -3'
miRNA:   3'- -GCGGu-------GCGCGG----GGGGCGCGGauCCUu -5'
23625 3' -65.7 NC_005261.1 + 129345 0.67 0.371438
Target:  5'- uCGCCGCgguaGCGCCCCcuuCCGCGCgcGGGu- -3'
miRNA:   3'- -GCGGUG----CGCGGGG---GGCGCGgaUCCuu -5'
23625 3' -65.7 NC_005261.1 + 129296 0.66 0.403239
Target:  5'- cCGCC-CGCccccgGCgCCCCGCGCCUGc--- -3'
miRNA:   3'- -GCGGuGCG-----CGgGGGGCGCGGAUccuu -5'
23625 3' -65.7 NC_005261.1 + 128929 0.67 0.371438
Target:  5'- uGCCACGUucGCCCCCaaaCGCGacgAGGAc -3'
miRNA:   3'- gCGGUGCG--CGGGGG---GCGCggaUCCUu -5'
23625 3' -65.7 NC_005261.1 + 127888 0.71 0.198367
Target:  5'- gCGCCG-GCGCCCgucgggCCCGgGCCUGGGc- -3'
miRNA:   3'- -GCGGUgCGCGGG------GGGCgCGGAUCCuu -5'
23625 3' -65.7 NC_005261.1 + 127688 0.67 0.371438
Target:  5'- gGCCGC-UGCCCCggCgGCGCCggAGGAGc -3'
miRNA:   3'- gCGGUGcGCGGGG--GgCGCGGa-UCCUU- -5'
23625 3' -65.7 NC_005261.1 + 126548 0.66 0.445324
Target:  5'- nGCCACGCGCCgCCgUCGCGCg------ -3'
miRNA:   3'- gCGGUGCGCGG-GG-GGCGCGgauccuu -5'
23625 3' -65.7 NC_005261.1 + 126526 0.78 0.070079
Target:  5'- gCGCC-CGCGCCCgCCGCGCCUcGGc- -3'
miRNA:   3'- -GCGGuGCGCGGGgGGCGCGGAuCCuu -5'
23625 3' -65.7 NC_005261.1 + 124937 0.69 0.286698
Target:  5'- cCGCCGCGCGCgCUgugCCgGCGCCcuGGAGc -3'
miRNA:   3'- -GCGGUGCGCG-GG---GGgCGCGGauCCUU- -5'
23625 3' -65.7 NC_005261.1 + 124257 0.69 0.280368
Target:  5'- gCGCCGCgcgGCGCCgCCCgCGCGCCccGGc- -3'
miRNA:   3'- -GCGGUG---CGCGG-GGG-GCGCGGauCCuu -5'
23625 3' -65.7 NC_005261.1 + 123637 0.66 0.43671
Target:  5'- cCGCUGCGCGaucagCCCCaCGCCcAGGAAg -3'
miRNA:   3'- -GCGGUGCGCgg---GGGGcGCGGaUCCUU- -5'
23625 3' -65.7 NC_005261.1 + 122810 0.75 0.102219
Target:  5'- aGCCGCGCGCCCgccagcaCCCGCGCUgcGGc- -3'
miRNA:   3'- gCGGUGCGCGGG-------GGGCGCGGauCCuu -5'
23625 3' -65.7 NC_005261.1 + 122704 0.66 0.411454
Target:  5'- uCGCCGCGcCGCCggCCGCGCCgucGAu -3'
miRNA:   3'- -GCGGUGC-GCGGggGGCGCGGaucCUu -5'
23625 3' -65.7 NC_005261.1 + 122367 0.77 0.075652
Target:  5'- gGCuCGCGCgGCCCCaCCGCgGCCUGGGGg -3'
miRNA:   3'- gCG-GUGCG-CGGGG-GGCG-CGGAUCCUu -5'
23625 3' -65.7 NC_005261.1 + 120601 0.67 0.371438
Target:  5'- uCGCC-UGCGgCCUCgGCGCCgUGGGGc -3'
miRNA:   3'- -GCGGuGCGCgGGGGgCGCGG-AUCCUu -5'
23625 3' -65.7 NC_005261.1 + 118197 0.72 0.180343
Target:  5'- gGCCcCGCGCCUgCCGCGCUgcgcGGGGc -3'
miRNA:   3'- gCGGuGCGCGGGgGGCGCGGa---UCCUu -5'
23625 3' -65.7 NC_005261.1 + 117747 0.66 0.419772
Target:  5'- gCGCCGC-CGCCCCCaaCGCGaCUcGGGu -3'
miRNA:   3'- -GCGGUGcGCGGGGG--GCGCgGAuCCUu -5'
23625 3' -65.7 NC_005261.1 + 117660 0.71 0.193719
Target:  5'- cCGCUAaGCGCCCCgCCGCGCCcggccGGGc -3'
miRNA:   3'- -GCGGUgCGCGGGG-GGCGCGGau---CCUu -5'
23625 3' -65.7 NC_005261.1 + 117261 0.66 0.44273
Target:  5'- uCGCCGCGCGCCucgaggacggcgagCCUgGCGCCg----- -3'
miRNA:   3'- -GCGGUGCGCGG--------------GGGgCGCGGauccuu -5'
23625 3' -65.7 NC_005261.1 + 116926 0.67 0.36376
Target:  5'- cCGCCGCGggcugcuggaCGCCUUCCGCGCCaacaagacgcGGAAg -3'
miRNA:   3'- -GCGGUGC----------GCGGGGGGCGCGGau--------CCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.