miRNA display CGI


Results 41 - 60 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23625 3' -65.7 NC_005261.1 + 116535 0.67 0.395128
Target:  5'- cCGCCGCuccGCGCCCgCgCGCGUCauacaAGGGAa -3'
miRNA:   3'- -GCGGUG---CGCGGGgG-GCGCGGa----UCCUU- -5'
23625 3' -65.7 NC_005261.1 + 115258 0.67 0.395128
Target:  5'- gCGCUccaGCaCGCCgCCgCGCGUCUGGGAc -3'
miRNA:   3'- -GCGG---UGcGCGGgGG-GCGCGGAUCCUu -5'
23625 3' -65.7 NC_005261.1 + 115161 0.69 0.29314
Target:  5'- gGUCGgGCGCCUCCUGCGCgaUGGGc- -3'
miRNA:   3'- gCGGUgCGCGGGGGGCGCGg-AUCCuu -5'
23625 3' -65.7 NC_005261.1 + 114998 0.66 0.445324
Target:  5'- gGCCGcCGCGgCCCCgGCcCCgcGGAGg -3'
miRNA:   3'- gCGGU-GCGCgGGGGgCGcGGauCCUU- -5'
23625 3' -65.7 NC_005261.1 + 113585 0.68 0.320034
Target:  5'- cCGCCGCGCuggGCgaCCUCGCGCCcGGGc- -3'
miRNA:   3'- -GCGGUGCG---CGg-GGGGCGCGGaUCCuu -5'
23625 3' -65.7 NC_005261.1 + 111850 0.72 0.184708
Target:  5'- gCGCgUGCGCGCCaaCCGCGCCUucguGGAGg -3'
miRNA:   3'- -GCG-GUGCGCGGggGGCGCGGAu---CCUU- -5'
23625 3' -65.7 NC_005261.1 + 111646 0.7 0.262046
Target:  5'- cCGCCGcCGCcucccaGCCCuCCCGCGCCgcGGu- -3'
miRNA:   3'- -GCGGU-GCG------CGGG-GGGCGCGGauCCuu -5'
23625 3' -65.7 NC_005261.1 + 110972 0.67 0.371438
Target:  5'- aGCUgcauguACGcCGCCUUCgUGCGCCUGGGGAc -3'
miRNA:   3'- gCGG------UGC-GCGGGGG-GCGCGGAUCCUU- -5'
23625 3' -65.7 NC_005261.1 + 110867 0.66 0.419772
Target:  5'- aGCCGCGCggccuaccgcuGCCCCgucUCGCGgCUGGGc- -3'
miRNA:   3'- gCGGUGCG-----------CGGGG---GGCGCgGAUCCuu -5'
23625 3' -65.7 NC_005261.1 + 110436 0.69 0.267438
Target:  5'- uGCCACGCGUUCCCgCaccgggcguuuggGUGCCUGGGc- -3'
miRNA:   3'- gCGGUGCGCGGGGG-G-------------CGCGGAUCCuu -5'
23625 3' -65.7 NC_005261.1 + 110167 0.74 0.137736
Target:  5'- cCGCCAcCGCGCCCCCCGgGCggcaguuccgcgaCguugAGGAGg -3'
miRNA:   3'- -GCGGU-GCGCGGGGGGCgCG-------------Ga---UCCUU- -5'
23625 3' -65.7 NC_005261.1 + 109535 0.69 0.279741
Target:  5'- cCGCCGCGgGCCCCCuCGCcacaaccGCCgcGGc- -3'
miRNA:   3'- -GCGGUGCgCGGGGG-GCG-------CGGauCCuu -5'
23625 3' -65.7 NC_005261.1 + 108390 0.67 0.355441
Target:  5'- gCGcCCGCGCGCUCCagcagccgcgccaCCGCGCCUGc--- -3'
miRNA:   3'- -GC-GGUGCGCGGGG-------------GGCGCGGAUccuu -5'
23625 3' -65.7 NC_005261.1 + 108325 0.76 0.099935
Target:  5'- cCGCCGCGUGCUCcgcgaCCCGCGCC-AGGGc -3'
miRNA:   3'- -GCGGUGCGCGGG-----GGGCGCGGaUCCUu -5'
23625 3' -65.7 NC_005261.1 + 108142 0.67 0.386329
Target:  5'- cCGCCACGCaGCCCaCCGCcugcagcgcguccGCC-AGGGc -3'
miRNA:   3'- -GCGGUGCG-CGGGgGGCG-------------CGGaUCCUu -5'
23625 3' -65.7 NC_005261.1 + 107016 0.67 0.390313
Target:  5'- gCGCCACGUGCCCaaggagcagggcgcgCCaCGCGCCg----- -3'
miRNA:   3'- -GCGGUGCGCGGG---------------GG-GCGCGGauccuu -5'
23625 3' -65.7 NC_005261.1 + 106898 0.66 0.454033
Target:  5'- gCGCC-UGCGUCgUCCGCGCCgcGGc- -3'
miRNA:   3'- -GCGGuGCGCGGgGGGCGCGGauCCuu -5'
23625 3' -65.7 NC_005261.1 + 106823 0.67 0.366818
Target:  5'- cCGCCagcagcgcguggugcGCGuCGUCCagCCCGcCGCCUGGGGGg -3'
miRNA:   3'- -GCGG---------------UGC-GCGGG--GGGC-GCGGAUCCUU- -5'
23625 3' -65.7 NC_005261.1 + 106697 0.66 0.403239
Target:  5'- gCGCCGauCGCGUCCCa-GCGCUgcAGGAAg -3'
miRNA:   3'- -GCGGU--GCGCGGGGggCGCGGa-UCCUU- -5'
23625 3' -65.7 NC_005261.1 + 106479 0.66 0.428191
Target:  5'- gCGCCGgGCuCCCCUCGuCGCCcuGGAc -3'
miRNA:   3'- -GCGGUgCGcGGGGGGC-GCGGauCCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.