miRNA display CGI


Results 1 - 20 of 421 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23627 3' -64.1 NC_005261.1 + 43109 0.67 0.482237
Target:  5'- aGGAcgugGCGCGGGauuggcgCGCCUacacaCGCGCGCg -3'
miRNA:   3'- -UCU----UGCGCCCg------GCGGGcag--GCGCGCG- -5'
23627 3' -64.1 NC_005261.1 + 543 0.67 0.482237
Target:  5'- cAGGGCGgacGGCgGCUCGgccgCCGCGCGg -3'
miRNA:   3'- -UCUUGCgc-CCGgCGGGCa---GGCGCGCg -5'
23627 3' -64.1 NC_005261.1 + 15275 0.67 0.482237
Target:  5'- ----gGCGGcGCCGCCgGggCGCGCGg -3'
miRNA:   3'- ucuugCGCC-CGGCGGgCagGCGCGCg -5'
23627 3' -64.1 NC_005261.1 + 9161 0.67 0.482237
Target:  5'- uGGGACcUGGcGCCGCCCGgccagguaCGUGgGCg -3'
miRNA:   3'- -UCUUGcGCC-CGGCGGGCag------GCGCgCG- -5'
23627 3' -64.1 NC_005261.1 + 2643 0.67 0.482237
Target:  5'- cAGcACGCGGGCgGgcagcggcggcuCCCG-CCGCGCu- -3'
miRNA:   3'- -UCuUGCGCCCGgC------------GGGCaGGCGCGcg -5'
23627 3' -64.1 NC_005261.1 + 138214 0.67 0.482237
Target:  5'- cAGGGCGgacGGCgGCUCGgccgCCGCGCGg -3'
miRNA:   3'- -UCUUGCgc-CCGgCGGGCa---GGCGCGCg -5'
23627 3' -64.1 NC_005261.1 + 80422 0.67 0.481341
Target:  5'- gAGAGCgaGCGGGCCGUaaagcggaaguuaCCGcggcUCuCGuCGCGCa -3'
miRNA:   3'- -UCUUG--CGCCCGGCG-------------GGC----AG-GC-GCGCG- -5'
23627 3' -64.1 NC_005261.1 + 68244 0.67 0.479551
Target:  5'- gGGGGCGUGuucguggacugccuGGCgCGCCUGcgcCCGCGCGg -3'
miRNA:   3'- -UCUUGCGC--------------CCG-GCGGGCa--GGCGCGCg -5'
23627 3' -64.1 NC_005261.1 + 51226 0.67 0.476873
Target:  5'- uGGGCGCGcuaGCCGCCUGgacgcuccaggcggCCGUGCuGCu -3'
miRNA:   3'- uCUUGCGCc--CGGCGGGCa-------------GGCGCG-CG- -5'
23627 3' -64.1 NC_005261.1 + 130127 0.67 0.473313
Target:  5'- cGAGCcgccGCGcGCCGUCCG-CCGaGCGCa -3'
miRNA:   3'- uCUUG----CGCcCGGCGGGCaGGCgCGCG- -5'
23627 3' -64.1 NC_005261.1 + 68822 0.67 0.473313
Target:  5'- -cAACGCcuGGGCCGuggcggccccCCCGUCC-CGCGg -3'
miRNA:   3'- ucUUGCG--CCCGGC----------GGGCAGGcGCGCg -5'
23627 3' -64.1 NC_005261.1 + 54 0.67 0.473313
Target:  5'- uGGGgGgGGGCCGaaaUCGg-CGCGCGCg -3'
miRNA:   3'- uCUUgCgCCCGGCg--GGCagGCGCGCG- -5'
23627 3' -64.1 NC_005261.1 + 1740 0.67 0.473313
Target:  5'- cGGuGCGCGGGCCcagGCgCGUggccaCCGUguaGCGCa -3'
miRNA:   3'- -UCuUGCGCCCGG---CGgGCA-----GGCG---CGCG- -5'
23627 3' -64.1 NC_005261.1 + 57980 0.67 0.473313
Target:  5'- aGGcGCGCGcGGCCGCgCCG-CCaaaaaGCGCc -3'
miRNA:   3'- -UCuUGCGC-CCGGCG-GGCaGGcg---CGCG- -5'
23627 3' -64.1 NC_005261.1 + 63022 0.67 0.473313
Target:  5'- --cGCGCGGGCgccggCGCCCGcggcgaggcggUCGCGCaGCa -3'
miRNA:   3'- ucuUGCGCCCG-----GCGGGCa----------GGCGCG-CG- -5'
23627 3' -64.1 NC_005261.1 + 71057 0.67 0.473313
Target:  5'- ---cCGUGGGCCaGCCg--CCGCGCGg -3'
miRNA:   3'- ucuuGCGCCCGG-CGGgcaGGCGCGCg -5'
23627 3' -64.1 NC_005261.1 + 137737 0.67 0.473313
Target:  5'- uGGGgGgGGGCCGaaaUCGg-CGCGCGCg -3'
miRNA:   3'- uCUUgCgCCCGGCg--GGCagGCGCGCG- -5'
23627 3' -64.1 NC_005261.1 + 3838 0.67 0.472425
Target:  5'- cGGGCGCuGGCgGCagcggcgCCGgcgCCGCGCGg -3'
miRNA:   3'- uCUUGCGcCCGgCG-------GGCa--GGCGCGCg -5'
23627 3' -64.1 NC_005261.1 + 50519 0.67 0.470652
Target:  5'- -cAGCGCagcaGGGCCgucgucuugcccgaGCCCaUCgGCGCGCg -3'
miRNA:   3'- ucUUGCG----CCCGG--------------CGGGcAGgCGCGCG- -5'
23627 3' -64.1 NC_005261.1 + 106329 0.67 0.464473
Target:  5'- uGAGCcaCGGccccGCCGCCgCGUCCGCccccgccgccGCGCu -3'
miRNA:   3'- uCUUGc-GCC----CGGCGG-GCAGGCG----------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.