miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23627 5' -53 NC_005261.1 + 5164 0.66 0.972156
Target:  5'- -cGGGcCGCGUCGAGcAGGgCCGgGUCc -3'
miRNA:   3'- caCUC-GCGCAGUUC-UUCaGGUgCAGc -5'
23627 5' -53 NC_005261.1 + 83724 0.66 0.972156
Target:  5'- aUGAGCGCGUUuAGcuuGaCgGCGUCGa -3'
miRNA:   3'- cACUCGCGCAGuUCuu-CaGgUGCAGC- -5'
23627 5' -53 NC_005261.1 + 101224 0.66 0.971296
Target:  5'- -cGcAGCGCGUCGAGguGgcgCCucagcucgcgcagcGCGUCGa -3'
miRNA:   3'- caC-UCGCGCAGUUCuuCa--GG--------------UGCAGC- -5'
23627 5' -53 NC_005261.1 + 67827 0.66 0.966053
Target:  5'- -cGGGCGCGcgCAGGAGGgCCGCa--- -3'
miRNA:   3'- caCUCGCGCa-GUUCUUCaGGUGcagc -5'
23627 5' -53 NC_005261.1 + 56989 0.66 0.962673
Target:  5'- -cGAGCGCGU--GGA---CCACGUCa -3'
miRNA:   3'- caCUCGCGCAguUCUucaGGUGCAGc -5'
23627 5' -53 NC_005261.1 + 116194 0.67 0.955618
Target:  5'- cUGGGCGCGUCGccgcagaagcgcuccAGGAGcguguacaucacguUCCACagGUCGa -3'
miRNA:   3'- cACUCGCGCAGU---------------UCUUC--------------AGGUG--CAGC- -5'
23627 5' -53 NC_005261.1 + 98256 0.67 0.955223
Target:  5'- gGUGcGGCGCGUCAGGcGGcgCgCGCGuUCGa -3'
miRNA:   3'- -CAC-UCGCGCAGUUCuUCa-G-GUGC-AGC- -5'
23627 5' -53 NC_005261.1 + 67064 0.67 0.954826
Target:  5'- -cGGGCGCGcgcgggggcucgcUCGGGcGGUCCAUGgcgCGa -3'
miRNA:   3'- caCUCGCGC-------------AGUUCuUCAGGUGCa--GC- -5'
23627 5' -53 NC_005261.1 + 85616 0.67 0.951145
Target:  5'- -gGuGCGCGUCGugaGGAAG-CCGcCGUUGa -3'
miRNA:   3'- caCuCGCGCAGU---UCUUCaGGU-GCAGC- -5'
23627 5' -53 NC_005261.1 + 82045 0.67 0.951145
Target:  5'- --uGGUGCGUCAGcGcGGgCCACGUCGc -3'
miRNA:   3'- cacUCGCGCAGUU-CuUCaGGUGCAGC- -5'
23627 5' -53 NC_005261.1 + 79174 0.67 0.951145
Target:  5'- cGUGgccAGCGCGcCgAAGggGUUCGCGaCGa -3'
miRNA:   3'- -CAC---UCGCGCaG-UUCuuCAGGUGCaGC- -5'
23627 5' -53 NC_005261.1 + 134289 0.67 0.951145
Target:  5'- cUGGGCGUG------GGUCCACGUCGc -3'
miRNA:   3'- cACUCGCGCaguucuUCAGGUGCAGC- -5'
23627 5' -53 NC_005261.1 + 90259 0.67 0.950724
Target:  5'- -aGGGCGCcaagGUCcuGGAGcccgagucgggcuUCCACGUCGa -3'
miRNA:   3'- caCUCGCG----CAGuuCUUC-------------AGGUGCAGC- -5'
23627 5' -53 NC_005261.1 + 107370 0.67 0.946825
Target:  5'- cGUGGGCGC--CGGGgcGcCCGCGUCc -3'
miRNA:   3'- -CACUCGCGcaGUUCuuCaGGUGCAGc -5'
23627 5' -53 NC_005261.1 + 46239 0.67 0.942261
Target:  5'- -cGAGCGCGUCGc-AGG-CCGCGgCGg -3'
miRNA:   3'- caCUCGCGCAGUucUUCaGGUGCaGC- -5'
23627 5' -53 NC_005261.1 + 57802 0.67 0.937943
Target:  5'- -cGGGCGCGcgaaggccgugaaggCgAAGggGUCCACGUg- -3'
miRNA:   3'- caCUCGCGCa--------------G-UUCuuCAGGUGCAgc -5'
23627 5' -53 NC_005261.1 + 82972 0.67 0.93745
Target:  5'- cGUGGuGCGCGUCGAGcacgGAGgcggCCGCcUCGc -3'
miRNA:   3'- -CACU-CGCGCAGUUC----UUCa---GGUGcAGC- -5'
23627 5' -53 NC_005261.1 + 82317 0.67 0.93745
Target:  5'- -cGAGCGCuUCGAGAGccgcUCCGCGUa- -3'
miRNA:   3'- caCUCGCGcAGUUCUUc---AGGUGCAgc -5'
23627 5' -53 NC_005261.1 + 69461 0.67 0.93745
Target:  5'- cUGcGGCGCGUCGAGGGccacaUCCGCG-CGa -3'
miRNA:   3'- cAC-UCGCGCAGUUCUUc----AGGUGCaGC- -5'
23627 5' -53 NC_005261.1 + 100537 0.68 0.93239
Target:  5'- --cAGCGCGUCGAucuccGAGUCCGCcUCGc -3'
miRNA:   3'- cacUCGCGCAGUUc----UUCAGGUGcAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.