miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23632 3' -56.8 NC_005261.1 + 104730 0.66 0.876023
Target:  5'- cGCGUCGUGccgcguGCGCGCgCCGUUcuGCaCCAg -3'
miRNA:   3'- cCGCAGUAC------CGCGUGaGGUAG--UG-GGU- -5'
23632 3' -56.8 NC_005261.1 + 88819 0.66 0.876023
Target:  5'- cGGCGgggCGgcGGCGCGCgCCG--GCCCGg -3'
miRNA:   3'- -CCGCa--GUa-CCGCGUGaGGUagUGGGU- -5'
23632 3' -56.8 NC_005261.1 + 110533 0.66 0.876023
Target:  5'- gGGCG-CAggagGGCGCGCgcacggaCCAggccgcaCACCCGc -3'
miRNA:   3'- -CCGCaGUa---CCGCGUGa------GGUa------GUGGGU- -5'
23632 3' -56.8 NC_005261.1 + 3438 0.66 0.876023
Target:  5'- aGCGUCcaggcgGGCGCGCgggCCGcCGCgCCGc -3'
miRNA:   3'- cCGCAGua----CCGCGUGa--GGUaGUG-GGU- -5'
23632 3' -56.8 NC_005261.1 + 113047 0.66 0.876023
Target:  5'- cGCGgCGUGGCGCGCcaCCGcUCGCUgGg -3'
miRNA:   3'- cCGCaGUACCGCGUGa-GGU-AGUGGgU- -5'
23632 3' -56.8 NC_005261.1 + 106903 0.66 0.876023
Target:  5'- uGCGUCGUccgcgccgcGGCGCGCUgCAggGCCg- -3'
miRNA:   3'- cCGCAGUA---------CCGCGUGAgGUagUGGgu -5'
23632 3' -56.8 NC_005261.1 + 35054 0.66 0.868703
Target:  5'- cGGCGgccgCGcggcGGCGguCUCCG-CGCCCc -3'
miRNA:   3'- -CCGCa---GUa---CCGCguGAGGUaGUGGGu -5'
23632 3' -56.8 NC_005261.1 + 125415 0.66 0.868703
Target:  5'- cGGCG-CG-GGCgGCGCUCaggcCGCCCAu -3'
miRNA:   3'- -CCGCaGUaCCG-CGUGAGgua-GUGGGU- -5'
23632 3' -56.8 NC_005261.1 + 123248 0.66 0.868703
Target:  5'- aGGCG-CG-GGCccCGC-CCAUCGCCCGu -3'
miRNA:   3'- -CCGCaGUaCCGc-GUGaGGUAGUGGGU- -5'
23632 3' -56.8 NC_005261.1 + 2136 0.66 0.86117
Target:  5'- cGCGcUCAcguccGGCGCGC-CCGUCcaggACCCGg -3'
miRNA:   3'- cCGC-AGUa----CCGCGUGaGGUAG----UGGGU- -5'
23632 3' -56.8 NC_005261.1 + 54779 0.66 0.86117
Target:  5'- gGGCGaCAggacGGCGCGCcCCGcCGCCUc -3'
miRNA:   3'- -CCGCaGUa---CCGCGUGaGGUaGUGGGu -5'
23632 3' -56.8 NC_005261.1 + 30211 0.66 0.86117
Target:  5'- aGGCGgccgCGcUGGCgGCGCgaaCCGUgGCCCc -3'
miRNA:   3'- -CCGCa---GU-ACCG-CGUGa--GGUAgUGGGu -5'
23632 3' -56.8 NC_005261.1 + 1510 0.66 0.86117
Target:  5'- cGGCagcucGUCG-GGCGCcaGCUCCAgcgcgcgcCGCCCGc -3'
miRNA:   3'- -CCG-----CAGUaCCGCG--UGAGGUa-------GUGGGU- -5'
23632 3' -56.8 NC_005261.1 + 122796 0.66 0.858099
Target:  5'- cGGCGUCcuuagagagccGCGCGCccgCCAgCACCCGc -3'
miRNA:   3'- -CCGCAGuac--------CGCGUGa--GGUaGUGGGU- -5'
23632 3' -56.8 NC_005261.1 + 116521 0.66 0.85343
Target:  5'- cGGCGgcgCGaGGCccgcCGCUCCG-CGCCCGc -3'
miRNA:   3'- -CCGCa--GUaCCGc---GUGAGGUaGUGGGU- -5'
23632 3' -56.8 NC_005261.1 + 15128 0.66 0.85343
Target:  5'- cGGCGUC---GCG-ACUCCuUCGCCCc -3'
miRNA:   3'- -CCGCAGuacCGCgUGAGGuAGUGGGu -5'
23632 3' -56.8 NC_005261.1 + 121519 0.66 0.85343
Target:  5'- gGGcCGUCgAUGGCGaGCUCCucGUCGCUg- -3'
miRNA:   3'- -CC-GCAG-UACCGCgUGAGG--UAGUGGgu -5'
23632 3' -56.8 NC_005261.1 + 86252 0.66 0.85343
Target:  5'- aGCGUCGUGuGCGCGCacgcgugccggUCGUCGCgCGa -3'
miRNA:   3'- cCGCAGUAC-CGCGUGa----------GGUAGUGgGU- -5'
23632 3' -56.8 NC_005261.1 + 70985 0.66 0.848689
Target:  5'- aGCG-CGUGGCGCGCgggcggccgccaggCCAgcUCGCCg- -3'
miRNA:   3'- cCGCaGUACCGCGUGa-------------GGU--AGUGGgu -5'
23632 3' -56.8 NC_005261.1 + 113350 0.66 0.845489
Target:  5'- gGGCuGUaCAacGCGCAgUUCGUCGCCCu -3'
miRNA:   3'- -CCG-CA-GUacCGCGUgAGGUAGUGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.