miRNA display CGI


Results 1 - 20 of 335 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23632 5' -64.3 NC_005261.1 + 34344 0.66 0.510572
Target:  5'- gGCcgGGGCGGCcGaCGgG-GCCGGGCGc -3'
miRNA:   3'- gCG--CCCGUCGuC-GCgCaCGGUCCGCa -5'
23632 5' -64.3 NC_005261.1 + 98676 0.66 0.510572
Target:  5'- gGCGGGCuccgccggGGCcggaGGCGCG-GCCGGaGCu- -3'
miRNA:   3'- gCGCCCG--------UCG----UCGCGCaCGGUC-CGca -5'
23632 5' -64.3 NC_005261.1 + 98380 0.66 0.510572
Target:  5'- gGCGGGCGcaauacCGGCGUGggGgCGGGCGc -3'
miRNA:   3'- gCGCCCGUc-----GUCGCGCa-CgGUCCGCa -5'
23632 5' -64.3 NC_005261.1 + 93911 0.66 0.510572
Target:  5'- uGCGGGC-GCGGCGCccG-CGGGCu- -3'
miRNA:   3'- gCGCCCGuCGUCGCGcaCgGUCCGca -5'
23632 5' -64.3 NC_005261.1 + 135293 0.66 0.510572
Target:  5'- gGCGGGUuccGCgcgaccGGCGUGUcGCCcuGGGCGg -3'
miRNA:   3'- gCGCCCGu--CG------UCGCGCA-CGG--UCCGCa -5'
23632 5' -64.3 NC_005261.1 + 63364 0.66 0.510572
Target:  5'- gGUGGcGCGGUGcGgGUGUGCCGGGUc- -3'
miRNA:   3'- gCGCC-CGUCGU-CgCGCACGGUCCGca -5'
23632 5' -64.3 NC_005261.1 + 64678 0.66 0.510572
Target:  5'- cCGUGGuGCGGCaccgGGCGCGUcCCGGGg-- -3'
miRNA:   3'- -GCGCC-CGUCG----UCGCGCAcGGUCCgca -5'
23632 5' -64.3 NC_005261.1 + 88170 0.66 0.510572
Target:  5'- aGcCGGGCcggggcgacgccGGCGGCGcCG-GCgAGGCGg -3'
miRNA:   3'- gC-GCCCG------------UCGUCGC-GCaCGgUCCGCa -5'
23632 5' -64.3 NC_005261.1 + 19031 0.66 0.510572
Target:  5'- uCGCgGGGCAGcCGGagaGCc-GCCAGGCa- -3'
miRNA:   3'- -GCG-CCCGUC-GUCg--CGcaCGGUCCGca -5'
23632 5' -64.3 NC_005261.1 + 126929 0.66 0.510572
Target:  5'- cCGUuc-CAGCAGCGCG-GCCAGGgGc -3'
miRNA:   3'- -GCGcccGUCGUCGCGCaCGGUCCgCa -5'
23632 5' -64.3 NC_005261.1 + 70478 0.66 0.510572
Target:  5'- cCGCGGGU-GCGcGCGCGUGagcaCGuagcuGGCGUu -3'
miRNA:   3'- -GCGCCCGuCGU-CGCGCACg---GU-----CCGCA- -5'
23632 5' -64.3 NC_005261.1 + 132516 0.66 0.509637
Target:  5'- aCGCGGGCugggacgaguacgAGCGcgcccucgcGCGCGaggGCgAGGCGc -3'
miRNA:   3'- -GCGCCCG-------------UCGU---------CGCGCa--CGgUCCGCa -5'
23632 5' -64.3 NC_005261.1 + 27267 0.66 0.504972
Target:  5'- uGCGGGCAGCccggccGGCccccggaccgcccucGCGagcagGCCGGGCc- -3'
miRNA:   3'- gCGCCCGUCG------UCG---------------CGCa----CGGUCCGca -5'
23632 5' -64.3 NC_005261.1 + 11465 0.66 0.501254
Target:  5'- aGCGGaGCG--GGCGCGgagggGCgGGGCGg -3'
miRNA:   3'- gCGCC-CGUcgUCGCGCa----CGgUCCGCa -5'
23632 5' -64.3 NC_005261.1 + 125413 0.66 0.501254
Target:  5'- aGCGGcGCgGGCGGCGCucagGCCGcccaucccuagcGGCGUc -3'
miRNA:   3'- gCGCC-CG-UCGUCGCGca--CGGU------------CCGCA- -5'
23632 5' -64.3 NC_005261.1 + 72466 0.66 0.501254
Target:  5'- aGCGcGGCgAGCgcgAGCGCG-GCCAGcGCc- -3'
miRNA:   3'- gCGC-CCG-UCG---UCGCGCaCGGUC-CGca -5'
23632 5' -64.3 NC_005261.1 + 47365 0.66 0.501254
Target:  5'- cCGaCGGGCAcCAGCGCGcGCacaaccgucgGGGCGg -3'
miRNA:   3'- -GC-GCCCGUcGUCGCGCaCGg---------UCCGCa -5'
23632 5' -64.3 NC_005261.1 + 104270 0.66 0.501254
Target:  5'- cCGCGgucucGGCGGCuGCGCGgGCCucgcAGGCc- -3'
miRNA:   3'- -GCGC-----CCGUCGuCGCGCaCGG----UCCGca -5'
23632 5' -64.3 NC_005261.1 + 71966 0.66 0.501254
Target:  5'- gCGCgGGGCGcGgAGCGCGcGgCAGGUGc -3'
miRNA:   3'- -GCG-CCCGU-CgUCGCGCaCgGUCCGCa -5'
23632 5' -64.3 NC_005261.1 + 53982 0.66 0.501254
Target:  5'- aGCGcGGCgAGCuccAGCGCGcggcGCaCAGGCGc -3'
miRNA:   3'- gCGC-CCG-UCG---UCGCGCa---CG-GUCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.