miRNA display CGI


Results 1 - 20 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23633 3' -57.8 NC_005261.1 + 137860 0.66 0.829313
Target:  5'- gCugGCGCcccuggUGC-UCccgggGCCAGCgGUGCCg -3'
miRNA:   3'- aGugCGUG------ACGuAG-----UGGUCGgCGCGG- -5'
23633 3' -57.8 NC_005261.1 + 112680 0.66 0.829313
Target:  5'- -aGCGCGaggggcuggGCGUCGa-GGCCGUGCCc -3'
miRNA:   3'- agUGCGUga-------CGUAGUggUCGGCGCGG- -5'
23633 3' -57.8 NC_005261.1 + 101782 0.66 0.829313
Target:  5'- -aGCGCGCgUGCcgC-CCGGCgGgGCUg -3'
miRNA:   3'- agUGCGUG-ACGuaGuGGUCGgCgCGG- -5'
23633 3' -57.8 NC_005261.1 + 112507 0.66 0.829313
Target:  5'- -aACGCGCUGCGaCAaccuguUCAGCUGCcucuggguGCCg -3'
miRNA:   3'- agUGCGUGACGUaGU------GGUCGGCG--------CGG- -5'
23633 3' -57.8 NC_005261.1 + 47682 0.66 0.829313
Target:  5'- gCGCaGCACgGC--CGCCcGCgGCGCCg -3'
miRNA:   3'- aGUG-CGUGaCGuaGUGGuCGgCGCGG- -5'
23633 3' -57.8 NC_005261.1 + 100679 0.66 0.829313
Target:  5'- uUCGCGCGCgagUGCAcCG-CGGCCGCGn- -3'
miRNA:   3'- -AGUGCGUG---ACGUaGUgGUCGGCGCgg -5'
23633 3' -57.8 NC_005261.1 + 37752 0.66 0.829313
Target:  5'- cCGCGgGC-GCcgCGCC-GCCcaaGCGCCg -3'
miRNA:   3'- aGUGCgUGaCGuaGUGGuCGG---CGCGG- -5'
23633 3' -57.8 NC_005261.1 + 177 0.66 0.829313
Target:  5'- gCugGCGCcccuggUGC-UCccgggGCCAGCgGUGCCg -3'
miRNA:   3'- aGugCGUG------ACGuAG-----UGGUCGgCGCGG- -5'
23633 3' -57.8 NC_005261.1 + 65377 0.66 0.829313
Target:  5'- gCACGCcCgGCAUUACCuGCgGCGg- -3'
miRNA:   3'- aGUGCGuGaCGUAGUGGuCGgCGCgg -5'
23633 3' -57.8 NC_005261.1 + 4220 0.66 0.829313
Target:  5'- nCGCgGCGC-GCGUaCACCAGguccaCCaGCGCCg -3'
miRNA:   3'- aGUG-CGUGaCGUA-GUGGUC-----GG-CGCGG- -5'
23633 3' -57.8 NC_005261.1 + 60855 0.66 0.829313
Target:  5'- gUCGCGCGCcGg---GCCgAGcCCGCGCCg -3'
miRNA:   3'- -AGUGCGUGaCguagUGG-UC-GGCGCGG- -5'
23633 3' -57.8 NC_005261.1 + 77270 0.66 0.829313
Target:  5'- cUCGCGgGCgGCGUCugCA-UUGCGCUu -3'
miRNA:   3'- -AGUGCgUGaCGUAGugGUcGGCGCGG- -5'
23633 3' -57.8 NC_005261.1 + 73099 0.66 0.829313
Target:  5'- gUUGCGCACgGCG--GCCAGaaagcCCGCGUCc -3'
miRNA:   3'- -AGUGCGUGaCGUagUGGUC-----GGCGCGG- -5'
23633 3' -57.8 NC_005261.1 + 58265 0.66 0.829313
Target:  5'- gCGcCGCGCUcGCcgCGCUcacggGGCCggcGCGCCg -3'
miRNA:   3'- aGU-GCGUGA-CGuaGUGG-----UCGG---CGCGG- -5'
23633 3' -57.8 NC_005261.1 + 119960 0.66 0.828476
Target:  5'- cCGCGCACccGCcgucuccGUCGagccCCGGCCGaCGCUg -3'
miRNA:   3'- aGUGCGUGa-CG-------UAGU----GGUCGGC-GCGG- -5'
23633 3' -57.8 NC_005261.1 + 12591 0.66 0.82595
Target:  5'- -gGCGC-CUaGCGgaggauggacuUCAGCCGCGCCg -3'
miRNA:   3'- agUGCGuGA-CGUagu--------GGUCGGCGCGG- -5'
23633 3' -57.8 NC_005261.1 + 126562 0.66 0.820853
Target:  5'- gUCGCGCGCaaaUGCugCAgCAGCgCGCGgCa -3'
miRNA:   3'- -AGUGCGUG---ACGuaGUgGUCG-GCGCgG- -5'
23633 3' -57.8 NC_005261.1 + 118933 0.66 0.820853
Target:  5'- gCGCgGCGCcGCGcgGCUGGCCGCGgCg -3'
miRNA:   3'- aGUG-CGUGaCGUagUGGUCGGCGCgG- -5'
23633 3' -57.8 NC_005261.1 + 67513 0.66 0.820853
Target:  5'- gUAgGC-CaGCGUCGCC-GCgGCGCCc -3'
miRNA:   3'- aGUgCGuGaCGUAGUGGuCGgCGCGG- -5'
23633 3' -57.8 NC_005261.1 + 19172 0.66 0.820853
Target:  5'- aUCACGCGaaGCAgcuGCCGGgCGCagucGCCu -3'
miRNA:   3'- -AGUGCGUgaCGUag-UGGUCgGCG----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.