miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23633 5' -58.6 NC_005261.1 + 43205 0.66 0.762208
Target:  5'- -uGGUGCgGCUCGCggaGCaCGUGuuUGAUa -3'
miRNA:   3'- uuCCACG-CGAGCGa--CG-GCACcuACUG- -5'
23633 5' -58.6 NC_005261.1 + 450 0.66 0.762208
Target:  5'- cGGGgacggGgGC-CGCgacgGCCGgcgGGAUGGCg -3'
miRNA:   3'- uUCCa----CgCGaGCGa---CGGCa--CCUACUG- -5'
23633 5' -58.6 NC_005261.1 + 138121 0.66 0.762208
Target:  5'- cGGGgacggGgGC-CGCgacgGCCGgcgGGAUGGCg -3'
miRNA:   3'- uUCCa----CgCGaGCGa---CGGCa--CCUACUG- -5'
23633 5' -58.6 NC_005261.1 + 101567 0.66 0.742845
Target:  5'- cGAGGaUGCGCUCgGCgcgcGCCGUGGccuccGCg -3'
miRNA:   3'- -UUCC-ACGCGAG-CGa---CGGCACCuac--UG- -5'
23633 5' -58.6 NC_005261.1 + 80660 0.66 0.742845
Target:  5'- -uGGUGUGCUCGCggugcgcGCCGUcGcgGAg -3'
miRNA:   3'- uuCCACGCGAGCGa------CGGCAcCuaCUg -5'
23633 5' -58.6 NC_005261.1 + 83185 0.66 0.733012
Target:  5'- -cGGUGCGCacccgcaGCUGCCGc--GUGACg -3'
miRNA:   3'- uuCCACGCGag-----CGACGGCaccUACUG- -5'
23633 5' -58.6 NC_005261.1 + 63376 0.67 0.703016
Target:  5'- cGGGUGUGCcgggUCGCccugGCCGUGGucgaacAUGAg -3'
miRNA:   3'- uUCCACGCG----AGCGa---CGGCACC------UACUg -5'
23633 5' -58.6 NC_005261.1 + 133824 0.67 0.682701
Target:  5'- cGAGGcgcUGCGCggcCGCgugcgcGCCGUGGccGGCg -3'
miRNA:   3'- -UUCC---ACGCGa--GCGa-----CGGCACCuaCUG- -5'
23633 5' -58.6 NC_005261.1 + 75586 0.67 0.682701
Target:  5'- -cGGcgcgGCGCUCGCgcgcGCCGcGGAcgcgGACg -3'
miRNA:   3'- uuCCa---CGCGAGCGa---CGGCaCCUa---CUG- -5'
23633 5' -58.6 NC_005261.1 + 96468 0.68 0.621018
Target:  5'- gAAGGccGCGCUcCGCgGCUGgGGGUGAUg -3'
miRNA:   3'- -UUCCa-CGCGA-GCGaCGGCaCCUACUG- -5'
23633 5' -58.6 NC_005261.1 + 64060 0.68 0.61072
Target:  5'- -uGGUGCGCcaccgGCUGCCGcacGGUGGCg -3'
miRNA:   3'- uuCCACGCGag---CGACGGCac-CUACUG- -5'
23633 5' -58.6 NC_005261.1 + 72307 0.68 0.59428
Target:  5'- uGGGccacGCGCUCGaUGCCccgcggcccaaggcaGUGGAUGGCg -3'
miRNA:   3'- uUCCa---CGCGAGCgACGG---------------CACCUACUG- -5'
23633 5' -58.6 NC_005261.1 + 23899 0.69 0.569763
Target:  5'- uAGGGUGgGCUCGCUggGCUGggccagcugGGGUGGg -3'
miRNA:   3'- -UUCCACgCGAGCGA--CGGCa--------CCUACUg -5'
23633 5' -58.6 NC_005261.1 + 28790 0.7 0.509778
Target:  5'- -cGG-GCGCUCGCgGCCGcGGcgGAg -3'
miRNA:   3'- uuCCaCGCGAGCGaCGGCaCCuaCUg -5'
23633 5' -58.6 NC_005261.1 + 52695 0.7 0.509778
Target:  5'- cGGGcGCGC-CGCUGCCGgccGAUGAa -3'
miRNA:   3'- uUCCaCGCGaGCGACGGCac-CUACUg -5'
23633 5' -58.6 NC_005261.1 + 60151 0.7 0.500026
Target:  5'- cAGGcgcugcagGCGC-CGCUGCCGUGGAa--- -3'
miRNA:   3'- uUCCa-------CGCGaGCGACGGCACCUacug -5'
23633 5' -58.6 NC_005261.1 + 23842 0.7 0.490357
Target:  5'- uAGGGUGgGCUCGCcggggcagGCCGgcuggGGcgGGCu -3'
miRNA:   3'- -UUCCACgCGAGCGa-------CGGCa----CCuaCUG- -5'
23633 5' -58.6 NC_005261.1 + 23785 0.7 0.490357
Target:  5'- uAGGGUGgGCUCGCcggggcagGCCGgcuggGGcgGGCu -3'
miRNA:   3'- -UUCCACgCGAGCGa-------CGGCa----CCuaCUG- -5'
23633 5' -58.6 NC_005261.1 + 135427 0.72 0.416483
Target:  5'- cGAGGUGCGCUCGCacGCCGcccaGGcgGcGCg -3'
miRNA:   3'- -UUCCACGCGAGCGa-CGGCa---CCuaC-UG- -5'
23633 5' -58.6 NC_005261.1 + 75747 0.74 0.319452
Target:  5'- -uGGUGCGC-CGcCUGCUGUGGAacGGCa -3'
miRNA:   3'- uuCCACGCGaGC-GACGGCACCUa-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.