miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23635 3' -65.1 NC_005261.1 + 118521 0.66 0.511273
Target:  5'- gGCGaGGcGCCCUGccccGCCGaccccUGCGGCg -3'
miRNA:   3'- gCGC-CC-CGGGACac--CGGCcu---ACGCCG- -5'
23635 3' -65.1 NC_005261.1 + 97257 0.66 0.511273
Target:  5'- uCGCGGGGUCggGUGGCgGGAcGUa-- -3'
miRNA:   3'- -GCGCCCCGGgaCACCGgCCUaCGccg -5'
23635 3' -65.1 NC_005261.1 + 105178 0.66 0.511273
Target:  5'- -aCGGGGCCCgcc-GCCGcc-GCGGCa -3'
miRNA:   3'- gcGCCCCGGGacacCGGCcuaCGCCG- -5'
23635 3' -65.1 NC_005261.1 + 32080 0.66 0.511273
Target:  5'- gCGCuGGGGCUCgggGaGCCGGAcuucGCGGa -3'
miRNA:   3'- -GCG-CCCCGGGacaC-CGGCCUa---CGCCg -5'
23635 3' -65.1 NC_005261.1 + 77044 0.66 0.511273
Target:  5'- gCGCGcGGCCCUcGgcgaccgcgccUGGCCGG-UGCcGCg -3'
miRNA:   3'- -GCGCcCCGGGA-C-----------ACCGGCCuACGcCG- -5'
23635 3' -65.1 NC_005261.1 + 127916 0.66 0.511273
Target:  5'- gGCuuGGGCUCg--GGCCcgcucGAUGCGGCg -3'
miRNA:   3'- gCGc-CCCGGGacaCCGGc----CUACGCCG- -5'
23635 3' -65.1 NC_005261.1 + 40244 0.66 0.511273
Target:  5'- cCG-GGGGCCgUGaGcGCCauGGcgGCGGCc -3'
miRNA:   3'- -GCgCCCCGGgACaC-CGG--CCuaCGCCG- -5'
23635 3' -65.1 NC_005261.1 + 2635 0.66 0.511273
Target:  5'- -aUGGGGCCCaGcacgcgGGCgGGcaGCGGCg -3'
miRNA:   3'- gcGCCCCGGGaCa-----CCGgCCuaCGCCG- -5'
23635 3' -65.1 NC_005261.1 + 63344 0.66 0.50211
Target:  5'- uGCGaGGCCCacggguucacgGUGGCgCGG-UGCGGg -3'
miRNA:   3'- gCGCcCCGGGa----------CACCG-GCCuACGCCg -5'
23635 3' -65.1 NC_005261.1 + 71611 0.66 0.50211
Target:  5'- cCGCcGcGGCCCg--GGCgCGGGcccggGCGGCg -3'
miRNA:   3'- -GCGcC-CCGGGacaCCG-GCCUa----CGCCG- -5'
23635 3' -65.1 NC_005261.1 + 73469 0.66 0.50211
Target:  5'- gCGCGccccCCCUG-GGCCGcGgcGCGGCg -3'
miRNA:   3'- -GCGCccc-GGGACaCCGGC-CuaCGCCG- -5'
23635 3' -65.1 NC_005261.1 + 128562 0.66 0.50211
Target:  5'- uCGCuGGcGCUCUGgGGcCCGGuugcgcugGCGGCa -3'
miRNA:   3'- -GCGcCC-CGGGACaCC-GGCCua------CGCCG- -5'
23635 3' -65.1 NC_005261.1 + 134879 0.66 0.496647
Target:  5'- cCGCGGGcCCCUgcugugcguucggugGUGGagCGGGUGCGcaaGCg -3'
miRNA:   3'- -GCGCCCcGGGA---------------CACCg-GCCUACGC---CG- -5'
23635 3' -65.1 NC_005261.1 + 3906 0.66 0.49302
Target:  5'- gCGCGGGcGCCCgcgccGCCGGcgcCGGCc -3'
miRNA:   3'- -GCGCCC-CGGGacac-CGGCCuacGCCG- -5'
23635 3' -65.1 NC_005261.1 + 27238 0.66 0.49302
Target:  5'- gGgGGaGGCgCCUGggguggGGCgGGGUGUgcgGGCa -3'
miRNA:   3'- gCgCC-CCG-GGACa-----CCGgCCUACG---CCG- -5'
23635 3' -65.1 NC_005261.1 + 98170 0.66 0.49302
Target:  5'- gGCGGGuguguCCUUGgagccGCCGGGggcGCGGCg -3'
miRNA:   3'- gCGCCCc----GGGACac---CGGCCUa--CGCCG- -5'
23635 3' -65.1 NC_005261.1 + 117918 0.66 0.49302
Target:  5'- uGCGcGGGaaCgaaGGCCGGcUGCGGCc -3'
miRNA:   3'- gCGC-CCCggGacaCCGGCCuACGCCG- -5'
23635 3' -65.1 NC_005261.1 + 97317 0.66 0.49302
Target:  5'- cCGCGGGGCCg-G-GGCCcGAUagGGCa -3'
miRNA:   3'- -GCGCCCCGGgaCaCCGGcCUAcgCCG- -5'
23635 3' -65.1 NC_005261.1 + 97417 0.66 0.49302
Target:  5'- gGCGGGcgcgccgggccuGCCCUugGGCgCGGGUcugggcuucgGCGGCg -3'
miRNA:   3'- gCGCCC------------CGGGAcaCCG-GCCUA----------CGCCG- -5'
23635 3' -65.1 NC_005261.1 + 127603 0.66 0.489405
Target:  5'- -uCGGGGCCgcgCUGaacgcuagcggccGGCCGGAcgcgacgGCGGCg -3'
miRNA:   3'- gcGCCCCGG---GACa------------CCGGCCUa------CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.