miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23635 5' -56.9 NC_005261.1 + 22673 0.66 0.853566
Target:  5'- -cGGCGCccgagUGcCGCcgggggacgggcccgGCgACGAGGCCGUCg -3'
miRNA:   3'- aaCUGCG-----ACaGCG---------------CG-UGCUUCGGCAG- -5'
23635 5' -56.9 NC_005261.1 + 31711 0.66 0.853566
Target:  5'- -cGACGCcGUgGaccccgcgaacuggcCGCGCGAuggcccGGCCGUCg -3'
miRNA:   3'- aaCUGCGaCAgC---------------GCGUGCU------UCGGCAG- -5'
23635 5' -56.9 NC_005261.1 + 96994 0.66 0.850383
Target:  5'- -cGGCGCggcuaagCGCGCcauuggGCG-GGCCGUCg -3'
miRNA:   3'- aaCUGCGaca----GCGCG------UGCuUCGGCAG- -5'
23635 5' -56.9 NC_005261.1 + 48805 0.66 0.850383
Target:  5'- gUGAgGCcGUgCGCGgcgucCGCGAcGCCGUCg -3'
miRNA:   3'- aACUgCGaCA-GCGC-----GUGCUuCGGCAG- -5'
23635 5' -56.9 NC_005261.1 + 134197 0.66 0.850383
Target:  5'- cUGGCGCgGcUCgGCGCGCGGgucgcggcGGCCGg- -3'
miRNA:   3'- aACUGCGaC-AG-CGCGUGCU--------UCGGCag -5'
23635 5' -56.9 NC_005261.1 + 15288 0.66 0.850383
Target:  5'- -gGGCGCgcgGUCGCGgccuccggguCGuCGGAGCCGg- -3'
miRNA:   3'- aaCUGCGa--CAGCGC----------GU-GCUUCGGCag -5'
23635 5' -56.9 NC_005261.1 + 28871 0.66 0.850383
Target:  5'- cUUGAgGCUG-CG-GCGCGGAcGCCGcCg -3'
miRNA:   3'- -AACUgCGACaGCgCGUGCUU-CGGCaG- -5'
23635 5' -56.9 NC_005261.1 + 132537 0.66 0.850383
Target:  5'- --aGCGCgcccUCGCGCGCGAGGgCGa- -3'
miRNA:   3'- aacUGCGac--AGCGCGUGCUUCgGCag -5'
23635 5' -56.9 NC_005261.1 + 86246 0.66 0.849583
Target:  5'- -cGAUGCagcgucgUGUgCGCGCACGcgugccGGUCGUCg -3'
miRNA:   3'- aaCUGCG-------ACA-GCGCGUGCu-----UCGGCAG- -5'
23635 5' -56.9 NC_005261.1 + 74681 0.66 0.842285
Target:  5'- -gGACGCgacCGCGCGgGAgcuGGCCGcCg -3'
miRNA:   3'- aaCUGCGacaGCGCGUgCU---UCGGCaG- -5'
23635 5' -56.9 NC_005261.1 + 61128 0.66 0.842285
Target:  5'- --uGCGCUGcuUCGCGCAagucauGGCCGUg -3'
miRNA:   3'- aacUGCGAC--AGCGCGUgcu---UCGGCAg -5'
23635 5' -56.9 NC_005261.1 + 38417 0.66 0.842285
Target:  5'- -cGcCGCUGUCGCGgGCGcccuUCGUCa -3'
miRNA:   3'- aaCuGCGACAGCGCgUGCuuc-GGCAG- -5'
23635 5' -56.9 NC_005261.1 + 71217 0.66 0.842285
Target:  5'- -cGAUGgUGcgcgCGCGCACGcGGCCcUCg -3'
miRNA:   3'- aaCUGCgACa---GCGCGUGCuUCGGcAG- -5'
23635 5' -56.9 NC_005261.1 + 111003 0.66 0.842285
Target:  5'- -gGACGCUG-C-CGCACGAcucGCCG-Cg -3'
miRNA:   3'- aaCUGCGACaGcGCGUGCUu--CGGCaG- -5'
23635 5' -56.9 NC_005261.1 + 16247 0.66 0.842285
Target:  5'- -cGACGUc--CGCGC-CGggGCCGcCg -3'
miRNA:   3'- aaCUGCGacaGCGCGuGCuuCGGCaG- -5'
23635 5' -56.9 NC_005261.1 + 118114 0.66 0.833991
Target:  5'- -aGACGCUGcgccgccggcUCGCGCcGCucGGCCGg- -3'
miRNA:   3'- aaCUGCGAC----------AGCGCG-UGcuUCGGCag -5'
23635 5' -56.9 NC_005261.1 + 105594 0.66 0.833991
Target:  5'- -gGGCGCg--UGCGCGCGAcgaacgccugcGGCaCGUCc -3'
miRNA:   3'- aaCUGCGacaGCGCGUGCU-----------UCG-GCAG- -5'
23635 5' -56.9 NC_005261.1 + 71010 0.66 0.833991
Target:  5'- -aGGCcaGCUcGcCGCGCAgGAAGgCGUCg -3'
miRNA:   3'- aaCUG--CGA-CaGCGCGUgCUUCgGCAG- -5'
23635 5' -56.9 NC_005261.1 + 15721 0.66 0.833991
Target:  5'- -gGACgGCgaaCGCG-ACGggGCCGUCc -3'
miRNA:   3'- aaCUG-CGacaGCGCgUGCuuCGGCAG- -5'
23635 5' -56.9 NC_005261.1 + 27359 0.66 0.82551
Target:  5'- -cGGCGCcGgacCG-GCGCGAGGCCGg- -3'
miRNA:   3'- aaCUGCGaCa--GCgCGUGCUUCGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.