miRNA display CGI


Results 1 - 20 of 407 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23637 3' -62.9 NC_005261.1 + 73374 0.65 0.57875
Target:  5'- gCGCCAGCagcgcggccacgCGCGCGuGCAGCaccagguacgggGCCGc -3'
miRNA:   3'- -GUGGUCG------------GCGCGCuCGUCGga----------CGGCu -5'
23637 3' -62.9 NC_005261.1 + 9838 0.66 0.576786
Target:  5'- aGCCGGCC-CGCccgGGGCaagcccgccccagccGGCCUGCCc- -3'
miRNA:   3'- gUGGUCGGcGCG---CUCG---------------UCGGACGGcu -5'
23637 3' -62.9 NC_005261.1 + 9895 0.66 0.576786
Target:  5'- aGCCGGCC-CGCccgGGGCaagcccgccccagccGGCCUGCCc- -3'
miRNA:   3'- gUGGUCGGcGCG---CUCG---------------UCGGACGGcu -5'
23637 3' -62.9 NC_005261.1 + 126031 0.66 0.576786
Target:  5'- cCGCgCGGCCGCGCGuacgaguGCucccgcuccggcgccAGCCgcccGCCGGc -3'
miRNA:   3'- -GUG-GUCGGCGCGCu------CG---------------UCGGa---CGGCU- -5'
23637 3' -62.9 NC_005261.1 + 20133 0.66 0.57286
Target:  5'- gCAgCGGCUcCGCGAGCgcucaGGCCgcGCCGGc -3'
miRNA:   3'- -GUgGUCGGcGCGCUCG-----UCGGa-CGGCU- -5'
23637 3' -62.9 NC_005261.1 + 65581 0.66 0.57286
Target:  5'- gCACCuGGUC-CGCGAGCuccuGCUcGCCGGg -3'
miRNA:   3'- -GUGG-UCGGcGCGCUCGu---CGGaCGGCU- -5'
23637 3' -62.9 NC_005261.1 + 86060 0.66 0.57286
Target:  5'- --aCGGCgGCGCGGuacGUGGCCUGCaUGAu -3'
miRNA:   3'- gugGUCGgCGCGCU---CGUCGGACG-GCU- -5'
23637 3' -62.9 NC_005261.1 + 58260 0.66 0.57286
Target:  5'- gCGCCGcGCCGCGCucGCcgcgcucacggGGCCggcgcGCCGGg -3'
miRNA:   3'- -GUGGU-CGGCGCGcuCG-----------UCGGa----CGGCU- -5'
23637 3' -62.9 NC_005261.1 + 27734 0.66 0.57286
Target:  5'- gAgCGGagaCGCGCGGGCAGaggaGCCGAg -3'
miRNA:   3'- gUgGUCg--GCGCGCUCGUCgga-CGGCU- -5'
23637 3' -62.9 NC_005261.1 + 23806 0.66 0.57286
Target:  5'- gGCCGGCUgGgGCGGGCuuGCCccgggcggGCCGGc -3'
miRNA:   3'- gUGGUCGG-CgCGCUCGu-CGGa-------CGGCU- -5'
23637 3' -62.9 NC_005261.1 + 53022 0.66 0.57286
Target:  5'- uCGCCAGCgcuuccgcgGCGCcgGGGCAGCC-GUCGGg -3'
miRNA:   3'- -GUGGUCGg--------CGCG--CUCGUCGGaCGGCU- -5'
23637 3' -62.9 NC_005261.1 + 79822 0.66 0.57286
Target:  5'- gCGCgCGGCgGCGCG-GCGGCCaGCg-- -3'
miRNA:   3'- -GUG-GUCGgCGCGCuCGUCGGaCGgcu -5'
23637 3' -62.9 NC_005261.1 + 104694 0.66 0.57286
Target:  5'- gGCCA-CCGCcccgaaGAGCGGCUggacgGCCGAg -3'
miRNA:   3'- gUGGUcGGCGcg----CUCGUCGGa----CGGCU- -5'
23637 3' -62.9 NC_005261.1 + 75350 0.66 0.57286
Target:  5'- -gUCGGCCuCGUgGAGCAGC-UGCCGGc -3'
miRNA:   3'- guGGUCGGcGCG-CUCGUCGgACGGCU- -5'
23637 3' -62.9 NC_005261.1 + 116922 0.66 0.57286
Target:  5'- --aCAGCCGcCGCGGGCuGCUggacGCCu- -3'
miRNA:   3'- gugGUCGGC-GCGCUCGuCGGa---CGGcu -5'
23637 3' -62.9 NC_005261.1 + 107645 0.66 0.57286
Target:  5'- gCGCCcgcGCUGCGCGcgcaaacuccGCGGCCccGCCGGg -3'
miRNA:   3'- -GUGGu--CGGCGCGCu---------CGUCGGa-CGGCU- -5'
23637 3' -62.9 NC_005261.1 + 28424 0.66 0.57286
Target:  5'- -uCCAGggacCCGCGCGcaccGCGGCCgGCCa- -3'
miRNA:   3'- guGGUC----GGCGCGCu---CGUCGGaCGGcu -5'
23637 3' -62.9 NC_005261.1 + 73601 0.66 0.57286
Target:  5'- gCGgCGGCCGCgaGCGcGCGGCCcGUCGu -3'
miRNA:   3'- -GUgGUCGGCG--CGCuCGUCGGaCGGCu -5'
23637 3' -62.9 NC_005261.1 + 23863 0.66 0.57286
Target:  5'- gGCCGGCUgGgGCGGGCuuGCCccgggcggGCCGGc -3'
miRNA:   3'- gUGGUCGG-CgCGCUCGu-CGGa-------CGGCU- -5'
23637 3' -62.9 NC_005261.1 + 71334 0.66 0.57188
Target:  5'- aGCCGGCCGCgagcgcguccucgGUGAGC-GCCgagaGCgCGAg -3'
miRNA:   3'- gUGGUCGGCG-------------CGCUCGuCGGa---CG-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.