miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23637 5' -53.9 NC_005261.1 + 27722 0.66 0.960582
Target:  5'- uCGCCGCGggaGGAgCggagACGCGCGGGc -3'
miRNA:   3'- -GCGGUGCa--UCUaGaag-UGCGCGCUCa -5'
23637 5' -53.9 NC_005261.1 + 125927 0.66 0.956863
Target:  5'- uCGCCACGcgcacGGUagccgCugGCGCGGGg -3'
miRNA:   3'- -GCGGUGCau---CUAgaa--GugCGCGCUCa -5'
23637 5' -53.9 NC_005261.1 + 70324 0.66 0.956863
Target:  5'- uGCCGCaGUAGGcg--CACGCGuCGAGc -3'
miRNA:   3'- gCGGUG-CAUCUagaaGUGCGC-GCUCa -5'
23637 5' -53.9 NC_005261.1 + 103012 0.66 0.952911
Target:  5'- gCGCUccGCGUGGcUCUcgaagaACGCGCGGGc -3'
miRNA:   3'- -GCGG--UGCAUCuAGAag----UGCGCGCUCa -5'
23637 5' -53.9 NC_005261.1 + 72974 0.66 0.952911
Target:  5'- cCGCCGCGgGGGUCcgCGaGCGCGGc- -3'
miRNA:   3'- -GCGGUGCaUCUAGaaGUgCGCGCUca -5'
23637 5' -53.9 NC_005261.1 + 5276 0.66 0.952911
Target:  5'- aCGCCAUGgccGGccgCggUGCGCGCGGGUc -3'
miRNA:   3'- -GCGGUGCa--UCua-GaaGUGCGCGCUCA- -5'
23637 5' -53.9 NC_005261.1 + 52446 0.66 0.948722
Target:  5'- gGCCACG-AGGUCcccggCGCGCGUcAGg -3'
miRNA:   3'- gCGGUGCaUCUAGaa---GUGCGCGcUCa -5'
23637 5' -53.9 NC_005261.1 + 2745 0.66 0.948722
Target:  5'- gCGCCGCGgcGggCcgUCGCG-GCGGGc -3'
miRNA:   3'- -GCGGUGCauCuaGa-AGUGCgCGCUCa -5'
23637 5' -53.9 NC_005261.1 + 76563 0.66 0.948722
Target:  5'- gGCgACGaGGGcgagcucgUCcUCACGCGCGAGc -3'
miRNA:   3'- gCGgUGCaUCU--------AGaAGUGCGCGCUCa -5'
23637 5' -53.9 NC_005261.1 + 70475 0.66 0.948722
Target:  5'- gCGCCGCG-GGugcg-CGCGCGUGAGc -3'
miRNA:   3'- -GCGGUGCaUCuagaaGUGCGCGCUCa -5'
23637 5' -53.9 NC_005261.1 + 40350 0.66 0.948722
Target:  5'- cCGCU-CGUGGggC-UCGCGCaGCGGGUu -3'
miRNA:   3'- -GCGGuGCAUCuaGaAGUGCG-CGCUCA- -5'
23637 5' -53.9 NC_005261.1 + 81494 0.66 0.944294
Target:  5'- gGCCGCGgcUAGcgCggCGCGCGCGc-- -3'
miRNA:   3'- gCGGUGC--AUCuaGaaGUGCGCGCuca -5'
23637 5' -53.9 NC_005261.1 + 49765 0.66 0.941521
Target:  5'- cCGUCGUGUAGAUCagCACGCggacgucgcgccagcGCGAGa -3'
miRNA:   3'- -GCGGUGCAUCUAGaaGUGCG---------------CGCUCa -5'
23637 5' -53.9 NC_005261.1 + 90737 0.66 0.939623
Target:  5'- gGCCGCGccuGAggcgCugGCGCGGGa -3'
miRNA:   3'- gCGGUGCau-CUagaaGugCGCGCUCa -5'
23637 5' -53.9 NC_005261.1 + 83614 0.66 0.939623
Target:  5'- cCGCCGCGgcguGGUCca---GCGCGAGg -3'
miRNA:   3'- -GCGGUGCau--CUAGaagugCGCGCUCa -5'
23637 5' -53.9 NC_005261.1 + 86264 0.66 0.939623
Target:  5'- gCGCaCGCGUGccGGUCgu--CGCGCGAGc -3'
miRNA:   3'- -GCG-GUGCAU--CUAGaaguGCGCGCUCa -5'
23637 5' -53.9 NC_005261.1 + 59091 0.67 0.934707
Target:  5'- gCGCCGCGcccucGcgCUcgcaggCGCGCGCGAGc -3'
miRNA:   3'- -GCGGUGCau---CuaGAa-----GUGCGCGCUCa -5'
23637 5' -53.9 NC_005261.1 + 108948 0.67 0.934707
Target:  5'- aCGCCGCG----UCcUCGCGCGCGuAGa -3'
miRNA:   3'- -GCGGUGCaucuAGaAGUGCGCGC-UCa -5'
23637 5' -53.9 NC_005261.1 + 25260 0.67 0.929544
Target:  5'- cCGCCAU-UAGAUUuuUUCGC-CGCGAGg -3'
miRNA:   3'- -GCGGUGcAUCUAG--AAGUGcGCGCUCa -5'
23637 5' -53.9 NC_005261.1 + 99712 0.67 0.929544
Target:  5'- cCGCCACGg------UCGCGCGCGuGg -3'
miRNA:   3'- -GCGGUGCaucuagaAGUGCGCGCuCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.