miRNA display CGI


Results 21 - 40 of 649 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23638 3' -62.7 NC_005261.1 + 14455 0.66 0.623454
Target:  5'- -gGGGCGCGCGgcggaGCuCGCGCUgguccuccaacgCGGUg -3'
miRNA:   3'- ugCCCGUGUGCag---CGuGCGCGG------------GCCG- -5'
23638 3' -62.7 NC_005261.1 + 53235 0.66 0.623454
Target:  5'- gAUGcGGCGCcaGC-UCGCcccGCGCGuCCCGGUc -3'
miRNA:   3'- -UGC-CCGUG--UGcAGCG---UGCGC-GGGCCG- -5'
23638 3' -62.7 NC_005261.1 + 52981 0.66 0.623454
Target:  5'- gGCGccGGCAgGCGgggGCG-GCGCCCaGGCg -3'
miRNA:   3'- -UGC--CCGUgUGCag-CGUgCGCGGG-CCG- -5'
23638 3' -62.7 NC_005261.1 + 13413 0.66 0.623454
Target:  5'- -aGGGCgACGCGaaggCGCAcCGCGCgucgaCCGGg -3'
miRNA:   3'- ugCCCG-UGUGCa---GCGU-GCGCG-----GGCCg -5'
23638 3' -62.7 NC_005261.1 + 102171 0.66 0.623454
Target:  5'- aGCGgcGGCgGCACGUCGaucCGCGCGUUCucgGGCg -3'
miRNA:   3'- -UGC--CCG-UGUGCAGC---GUGCGCGGG---CCG- -5'
23638 3' -62.7 NC_005261.1 + 13309 0.66 0.623454
Target:  5'- gACGGGgGCcuCGUaCGCA-GCGCCCucGCa -3'
miRNA:   3'- -UGCCCgUGu-GCA-GCGUgCGCGGGc-CG- -5'
23638 3' -62.7 NC_005261.1 + 48431 0.66 0.623454
Target:  5'- gGCGGuacaGCuCGCGgugCGUgGCGCGgCCGGCg -3'
miRNA:   3'- -UGCC----CGuGUGCa--GCG-UGCGCgGGCCG- -5'
23638 3' -62.7 NC_005261.1 + 2007 0.66 0.617589
Target:  5'- cGCGGGguCcacgGCGUCGaucacgaucagccgcCGcCGCGCCgCGGCc -3'
miRNA:   3'- -UGCCCguG----UGCAGC---------------GU-GCGCGG-GCCG- -5'
23638 3' -62.7 NC_005261.1 + 103487 0.66 0.61368
Target:  5'- aGCuGGCGCaagACGUCGUcgGCGCCgcggaCGGCg -3'
miRNA:   3'- -UGcCCGUG---UGCAGCGugCGCGG-----GCCG- -5'
23638 3' -62.7 NC_005261.1 + 88148 0.66 0.61368
Target:  5'- cGCGGGgGCGCccCGgcCGCGCaGCCgGGCc -3'
miRNA:   3'- -UGCCCgUGUGcaGC--GUGCG-CGGgCCG- -5'
23638 3' -62.7 NC_005261.1 + 32047 0.66 0.61368
Target:  5'- gACGGGCGCAaggacaugGcCGCGCagaGCgCGGCg -3'
miRNA:   3'- -UGCCCGUGUg-------CaGCGUGcg-CGgGCCG- -5'
23638 3' -62.7 NC_005261.1 + 73370 0.66 0.61368
Target:  5'- gGCGGcGCcagcaGCGCGgccaCGCGCGCGUgCaGCa -3'
miRNA:   3'- -UGCC-CG-----UGUGCa---GCGUGCGCGgGcCG- -5'
23638 3' -62.7 NC_005261.1 + 82970 0.66 0.61368
Target:  5'- gACGuGGUGCGCGUCgaGCACGgaggcggcCGCCuCGcGCa -3'
miRNA:   3'- -UGC-CCGUGUGCAG--CGUGC--------GCGG-GC-CG- -5'
23638 3' -62.7 NC_005261.1 + 90794 0.66 0.61368
Target:  5'- gGCcGGCGCGCGcuacCGCGUGCGCUggucuaCGGCg -3'
miRNA:   3'- -UGcCCGUGUGCa---GCGUGCGCGG------GCCG- -5'
23638 3' -62.7 NC_005261.1 + 70581 0.66 0.61368
Target:  5'- uCGGGCGCGag-CGCAgcggcgUGCGCCCGc- -3'
miRNA:   3'- uGCCCGUGUgcaGCGU------GCGCGGGCcg -5'
23638 3' -62.7 NC_005261.1 + 16294 0.66 0.61368
Target:  5'- -gGGGCGC-CGUCGgGCccagcgGCGgCCGGg -3'
miRNA:   3'- ugCCCGUGuGCAGCgUG------CGCgGGCCg -5'
23638 3' -62.7 NC_005261.1 + 100616 0.66 0.61368
Target:  5'- cGCaGGUGCAgGUCccgcucgcacagGCGCGCGgCCCGcGCc -3'
miRNA:   3'- -UGcCCGUGUgCAG------------CGUGCGC-GGGC-CG- -5'
23638 3' -62.7 NC_005261.1 + 70520 0.66 0.61368
Target:  5'- cACGGGgACGa-UCGCcacgGCgGCGCCCGcGCc -3'
miRNA:   3'- -UGCCCgUGUgcAGCG----UG-CGCGGGC-CG- -5'
23638 3' -62.7 NC_005261.1 + 104202 0.66 0.612703
Target:  5'- gACGGcguccaggcgcucGCGCGCGgcgCGCAcCGUGCCCuccaGCg -3'
miRNA:   3'- -UGCC-------------CGUGUGCa--GCGU-GCGCGGGc---CG- -5'
23638 3' -62.7 NC_005261.1 + 86514 0.66 0.612703
Target:  5'- -gGGGCuuGCcguccuuGUCGCAgCGCGgguuCCCGGCc -3'
miRNA:   3'- ugCCCGugUG-------CAGCGU-GCGC----GGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.