miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23638 5' -55.3 NC_005261.1 + 31768 0.66 0.928396
Target:  5'- cGUGUaccuGCGCGcCGcgGUGCUGCCc -3'
miRNA:   3'- -CGCAacu-CGCGCaGCuaCACGGUGGa -5'
23638 5' -55.3 NC_005261.1 + 42859 0.66 0.928396
Target:  5'- ----cGAGCGCGUCG-UGUccgaGCgCGCCUu -3'
miRNA:   3'- cgcaaCUCGCGCAGCuACA----CG-GUGGA- -5'
23638 5' -55.3 NC_005261.1 + 51002 0.66 0.921863
Target:  5'- cGCG-UGGGCGCGgcgggagcucggCGAgc-GCCACCc -3'
miRNA:   3'- -CGCaACUCGCGCa-----------GCUacaCGGUGGa -5'
23638 5' -55.3 NC_005261.1 + 33907 0.66 0.917314
Target:  5'- cGCGUauaaagcgGGGcCGCGUCucuUGUGUCGCCc -3'
miRNA:   3'- -CGCAa-------CUC-GCGCAGcu-ACACGGUGGa -5'
23638 5' -55.3 NC_005261.1 + 52809 0.66 0.9138
Target:  5'- cGCGgguuggcaaacagGGGCGCuUCGAgg-GCCGCCUc -3'
miRNA:   3'- -CGCaa-----------CUCGCGcAGCUacaCGGUGGA- -5'
23638 5' -55.3 NC_005261.1 + 46672 0.66 0.905264
Target:  5'- cGCGUUGGccGCGCGcuccaCGgcG-GCCGCCa -3'
miRNA:   3'- -CGCAACU--CGCGCa----GCuaCaCGGUGGa -5'
23638 5' -55.3 NC_005261.1 + 131770 0.66 0.905264
Target:  5'- cGCGgcGGGCGCGcCGcUGgGCC-CCg -3'
miRNA:   3'- -CGCaaCUCGCGCaGCuACaCGGuGGa -5'
23638 5' -55.3 NC_005261.1 + 104857 0.66 0.902739
Target:  5'- cGCGggucacgcaCGCGUCGAUGUcagcgucgaucGCCGCCg -3'
miRNA:   3'- -CGCaacuc----GCGCAGCUACA-----------CGGUGGa -5'
23638 5' -55.3 NC_005261.1 + 99227 0.66 0.89888
Target:  5'- cGCGgcaGGCGCGUCGgcGUcgcGcCCGCCg -3'
miRNA:   3'- -CGCaacUCGCGCAGCuaCA---C-GGUGGa -5'
23638 5' -55.3 NC_005261.1 + 67682 0.67 0.892261
Target:  5'- cGCGgUGAGCGCGUCaaGAaGUccacGUCGCCc -3'
miRNA:   3'- -CGCaACUCGCGCAG--CUaCA----CGGUGGa -5'
23638 5' -55.3 NC_005261.1 + 98167 0.67 0.892261
Target:  5'- gGCGgcGGGUGUGUCcuUGgaGCCGCCg -3'
miRNA:   3'- -CGCaaCUCGCGCAGcuACa-CGGUGGa -5'
23638 5' -55.3 NC_005261.1 + 66996 0.67 0.892261
Target:  5'- -----cAGCGCG-CGGUGgcagGCCACCUc -3'
miRNA:   3'- cgcaacUCGCGCaGCUACa---CGGUGGA- -5'
23638 5' -55.3 NC_005261.1 + 85966 0.67 0.88541
Target:  5'- gGCGUgguccgUGAuuGCGCGcUCGAgcUGcGCCGCCg -3'
miRNA:   3'- -CGCA------ACU--CGCGC-AGCU--ACaCGGUGGa -5'
23638 5' -55.3 NC_005261.1 + 68562 0.67 0.88541
Target:  5'- cGCGggcucuUUGAGCGCGUC-----GCCGCCg -3'
miRNA:   3'- -CGC------AACUCGCGCAGcuacaCGGUGGa -5'
23638 5' -55.3 NC_005261.1 + 99726 0.67 0.88541
Target:  5'- cGCGU--GGcCGCGUCaGGcgcGUGCCGCCa -3'
miRNA:   3'- -CGCAacUC-GCGCAG-CUa--CACGGUGGa -5'
23638 5' -55.3 NC_005261.1 + 1590 0.67 0.878331
Target:  5'- aGCgGUUG-GCgGCG-CGGUGgcugGCCGCCUc -3'
miRNA:   3'- -CG-CAACuCG-CGCaGCUACa---CGGUGGA- -5'
23638 5' -55.3 NC_005261.1 + 44216 0.67 0.878331
Target:  5'- gGCGgcccggGAGCGCG-CGcUGcugGCCGCCc -3'
miRNA:   3'- -CGCaa----CUCGCGCaGCuACa--CGGUGGa -5'
23638 5' -55.3 NC_005261.1 + 112682 0.67 0.878331
Target:  5'- cGCGagGGGCuggGCGUCGAggccGUGCCcgugcaggACCUg -3'
miRNA:   3'- -CGCaaCUCG---CGCAGCUa---CACGG--------UGGA- -5'
23638 5' -55.3 NC_005261.1 + 82664 0.67 0.871028
Target:  5'- cGCGgaUGAGCGCcucgagccgcucGUCGGgc-GCCACCg -3'
miRNA:   3'- -CGCa-ACUCGCG------------CAGCUacaCGGUGGa -5'
23638 5' -55.3 NC_005261.1 + 69451 0.67 0.871028
Target:  5'- cGCGgacgagcUGcGGCGCGUCGAgg-GCCACa- -3'
miRNA:   3'- -CGCa------AC-UCGCGCAGCUacaCGGUGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.