miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23639 3' -57.4 NC_005261.1 + 31009 0.66 0.835684
Target:  5'- gGCc-AGGGGCCcgGCGCCGgccaaaagccGGCGCGc- -3'
miRNA:   3'- aCGauUCCCUGG--UGCGGC----------UCGCGUag -5'
23639 3' -57.4 NC_005261.1 + 105756 0.66 0.835684
Target:  5'- cGCgcGGGGACCugGgugcucaGGGCGCGc- -3'
miRNA:   3'- aCGauUCCCUGGugCgg-----CUCGCGUag -5'
23639 3' -57.4 NC_005261.1 + 95290 0.66 0.835684
Target:  5'- gGCUGAuGG-CCA-GCUGGGCGCAg- -3'
miRNA:   3'- aCGAUUcCCuGGUgCGGCUCGCGUag -5'
23639 3' -57.4 NC_005261.1 + 28765 0.66 0.835684
Target:  5'- gGCcGGGGGcGCCugGgCCGcGGCGCGg- -3'
miRNA:   3'- aCGaUUCCC-UGGugC-GGC-UCGCGUag -5'
23639 3' -57.4 NC_005261.1 + 42915 0.66 0.835684
Target:  5'- cGCUccGGGGCC--GCCGGGCGaGUg -3'
miRNA:   3'- aCGAuuCCCUGGugCGGCUCGCgUAg -5'
23639 3' -57.4 NC_005261.1 + 125461 0.66 0.835684
Target:  5'- cGuCUAAGGGcGCCGagaaaGCCGcgGGCGCGa- -3'
miRNA:   3'- aC-GAUUCCC-UGGUg----CGGC--UCGCGUag -5'
23639 3' -57.4 NC_005261.1 + 116571 0.66 0.835684
Target:  5'- aGCgGAGGcGACgACGCCGAG-GCc-- -3'
miRNA:   3'- aCGaUUCC-CUGgUGCGGCUCgCGuag -5'
23639 3' -57.4 NC_005261.1 + 59705 0.66 0.834852
Target:  5'- cGCUccGGGcagacccGCC-CGCCGGGCgGCAg- -3'
miRNA:   3'- aCGAuuCCC-------UGGuGCGGCUCG-CGUag -5'
23639 3' -57.4 NC_005261.1 + 119008 0.66 0.834852
Target:  5'- cUGCU--GGGcCCGCGCCGAcgaaugaGCGgaCGUCg -3'
miRNA:   3'- -ACGAuuCCCuGGUGCGGCU-------CGC--GUAG- -5'
23639 3' -57.4 NC_005261.1 + 126941 0.66 0.827282
Target:  5'- cGCggccAGGG---GCGCCGGGCGCGg- -3'
miRNA:   3'- aCGau--UCCCuggUGCGGCUCGCGUag -5'
23639 3' -57.4 NC_005261.1 + 5157 0.66 0.827282
Target:  5'- gGCccGGcGGGCCGCGUCGAGCa---- -3'
miRNA:   3'- aCGauUC-CCUGGUGCGGCUCGcguag -5'
23639 3' -57.4 NC_005261.1 + 55709 0.66 0.824726
Target:  5'- cGCUuGGGcGGCCACGCgugucucuaugucgCGGGCGUg-- -3'
miRNA:   3'- aCGAuUCC-CUGGUGCG--------------GCUCGCGuag -5'
23639 3' -57.4 NC_005261.1 + 21815 0.66 0.8187
Target:  5'- gGCc--GGGcCCGCGgCGGGCGCGc- -3'
miRNA:   3'- aCGauuCCCuGGUGCgGCUCGCGUag -5'
23639 3' -57.4 NC_005261.1 + 132338 0.66 0.8187
Target:  5'- cUGCac-GGGGCCAugcgcagcuucCGCCGcGGCGCGcUCg -3'
miRNA:   3'- -ACGauuCCCUGGU-----------GCGGC-UCGCGU-AG- -5'
23639 3' -57.4 NC_005261.1 + 82882 0.66 0.8187
Target:  5'- cGCUGGcGGuGGCCuCGCCGcGCGCc-- -3'
miRNA:   3'- aCGAUU-CC-CUGGuGCGGCuCGCGuag -5'
23639 3' -57.4 NC_005261.1 + 31310 0.66 0.8187
Target:  5'- cGCgc-GGGGCC-CG-CGGGCGCGcUCg -3'
miRNA:   3'- aCGauuCCCUGGuGCgGCUCGCGU-AG- -5'
23639 3' -57.4 NC_005261.1 + 37812 0.66 0.8187
Target:  5'- cGCUGGaGGACCagcGCGCCgucaccugGAGCGCcuUCg -3'
miRNA:   3'- aCGAUUcCCUGG---UGCGG--------CUCGCGu-AG- -5'
23639 3' -57.4 NC_005261.1 + 121775 0.66 0.813469
Target:  5'- cGgUGGGGuGGCCGCgGCCGgcgggcugggcagggGGCGCGUg -3'
miRNA:   3'- aCgAUUCC-CUGGUG-CGGC---------------UCGCGUAg -5'
23639 3' -57.4 NC_005261.1 + 30359 0.66 0.809947
Target:  5'- gGCccugAAGGccGgCGCGCCGGGCGCcgCg -3'
miRNA:   3'- aCGa---UUCCc-UgGUGCGGCUCGCGuaG- -5'
23639 3' -57.4 NC_005261.1 + 32255 0.66 0.809947
Target:  5'- cGCUGcuGGAgCCgcACGCCGAgGCGCcgCc -3'
miRNA:   3'- aCGAUucCCU-GG--UGCGGCU-CGCGuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.