miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23639 5' -55.8 NC_005261.1 + 56754 1.09 0.002295
Target:  5'- cGUGUCGCCUUCAACACGCCGGCCUUCu -3'
miRNA:   3'- -CACAGCGGAAGUUGUGCGGCCGGAAG- -5'
23639 5' -55.8 NC_005261.1 + 3349 0.8 0.21552
Target:  5'- -cGgCGCC--CGGCGCGCCGGCCUUCa -3'
miRNA:   3'- caCaGCGGaaGUUGUGCGGCCGGAAG- -5'
23639 5' -55.8 NC_005261.1 + 76683 0.74 0.432408
Target:  5'- --cUCGCCgaCGACgACGCCGGCCUg- -3'
miRNA:   3'- cacAGCGGaaGUUG-UGCGGCCGGAag -5'
23639 5' -55.8 NC_005261.1 + 31265 0.74 0.441542
Target:  5'- --cUCGCCUUCGACcccgagGCGCUGGCCg-- -3'
miRNA:   3'- cacAGCGGAAGUUG------UGCGGCCGGaag -5'
23639 5' -55.8 NC_005261.1 + 58773 0.74 0.450784
Target:  5'- -aG-CGCCccCAGCGCGCCGGCCa-- -3'
miRNA:   3'- caCaGCGGaaGUUGUGCGGCCGGaag -5'
23639 5' -55.8 NC_005261.1 + 5054 0.74 0.46958
Target:  5'- -cGUCGUCgUCGGCccCGCCGGCCUcgUCa -3'
miRNA:   3'- caCAGCGGaAGUUGu-GCGGCCGGA--AG- -5'
23639 5' -55.8 NC_005261.1 + 74206 0.74 0.479127
Target:  5'- --aUCGCCagCAACGCGCCGcGCCUc- -3'
miRNA:   3'- cacAGCGGaaGUUGUGCGGC-CGGAag -5'
23639 5' -55.8 NC_005261.1 + 51655 0.73 0.488768
Target:  5'- ---cCGCCUUCGGCACGCUaguGGCCg-- -3'
miRNA:   3'- cacaGCGGAAGUUGUGCGG---CCGGaag -5'
23639 5' -55.8 NC_005261.1 + 133101 0.73 0.498499
Target:  5'- -gGcCGCCgUCAAC-CGCgCGGCCUUCc -3'
miRNA:   3'- caCaGCGGaAGUUGuGCG-GCCGGAAG- -5'
23639 5' -55.8 NC_005261.1 + 106117 0.73 0.518213
Target:  5'- -cGUCGCCggCGcgcGCGCGCCGGCa--- -3'
miRNA:   3'- caCAGCGGaaGU---UGUGCGGCCGgaag -5'
23639 5' -55.8 NC_005261.1 + 10543 0.73 0.518213
Target:  5'- cUGUCGCCccCGGCGCGCCuGCCg-- -3'
miRNA:   3'- cACAGCGGaaGUUGUGCGGcCGGaag -5'
23639 5' -55.8 NC_005261.1 + 59040 0.73 0.528187
Target:  5'- gGUGcCGCCgcgcgagcUCAGCGCGCgCGGCCg-- -3'
miRNA:   3'- -CACaGCGGa-------AGUUGUGCG-GCCGGaag -5'
23639 5' -55.8 NC_005261.1 + 74597 0.73 0.528187
Target:  5'- cGUGcCGgacgagcggaaCUUCAuCGCGCCGGCCUUCc -3'
miRNA:   3'- -CACaGCg----------GAAGUuGUGCGGCCGGAAG- -5'
23639 5' -55.8 NC_005261.1 + 60392 0.72 0.57899
Target:  5'- gGUG-CGCCUcCAugGCGCCgGGCCg-- -3'
miRNA:   3'- -CACaGCGGAaGUugUGCGG-CCGGaag -5'
23639 5' -55.8 NC_005261.1 + 93610 0.72 0.57899
Target:  5'- -cGUCGCCccgggUCGcgACGCCGGCCa-- -3'
miRNA:   3'- caCAGCGGa----AGUugUGCGGCCGGaag -5'
23639 5' -55.8 NC_005261.1 + 93250 0.71 0.599631
Target:  5'- -cGUCGCCUUCGAC-CGgCGcGCCa-- -3'
miRNA:   3'- caCAGCGGAAGUUGuGCgGC-CGGaag -5'
23639 5' -55.8 NC_005261.1 + 3518 0.71 0.609992
Target:  5'- -gGcCGCCUcCAGCGCGgCGGCCgccUCg -3'
miRNA:   3'- caCaGCGGAaGUUGUGCgGCCGGa--AG- -5'
23639 5' -55.8 NC_005261.1 + 38901 0.71 0.609992
Target:  5'- -cGUCGuCCUUCuccgGCGCGCgGGCCcgCg -3'
miRNA:   3'- caCAGC-GGAAGu---UGUGCGgCCGGaaG- -5'
23639 5' -55.8 NC_005261.1 + 119038 0.71 0.62037
Target:  5'- -cGUCGCCgacggUAACGCGCCcgcGGCCg-- -3'
miRNA:   3'- caCAGCGGaa---GUUGUGCGG---CCGGaag -5'
23639 5' -55.8 NC_005261.1 + 19777 0.71 0.641147
Target:  5'- -cGUCGCCUcgAACACGC-GGCCcUCc -3'
miRNA:   3'- caCAGCGGAagUUGUGCGgCCGGaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.