miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23640 3' -53.7 NC_005261.1 + 110663 0.66 0.961911
Target:  5'- gGUuuuCGUGUACgCGCAGCGcC-UGGAg -3'
miRNA:   3'- gCGuu-GCGCAUG-GUGUCGCaGuACCU- -5'
23640 3' -53.7 NC_005261.1 + 3769 0.66 0.961911
Target:  5'- gCGCcuCGCGgcagGCCGCAGCG-CAgcGGu -3'
miRNA:   3'- -GCGuuGCGCa---UGGUGUCGCaGUa-CCu -5'
23640 3' -53.7 NC_005261.1 + 86228 0.66 0.961911
Target:  5'- gGCAGcCG-GUGCCgcagccgauGCAGCGUCGUGu- -3'
miRNA:   3'- gCGUU-GCgCAUGG---------UGUCGCAGUACcu -5'
23640 3' -53.7 NC_005261.1 + 32315 0.66 0.961911
Target:  5'- cCGCcgcCGCG-GCCGCGGCGcccggCGUGGc -3'
miRNA:   3'- -GCGuu-GCGCaUGGUGUCGCa----GUACCu -5'
23640 3' -53.7 NC_005261.1 + 31683 0.66 0.960842
Target:  5'- cCGCGGCGCG-GCgGCGGCugaucgugaucgacGcCGUGGAc -3'
miRNA:   3'- -GCGUUGCGCaUGgUGUCG--------------CaGUACCU- -5'
23640 3' -53.7 NC_005261.1 + 13415 0.66 0.958267
Target:  5'- gGCGACGCGaaggcgcACCGC-GCGUCGaccGGGu -3'
miRNA:   3'- gCGUUGCGCa------UGGUGuCGCAGUa--CCU- -5'
23640 3' -53.7 NC_005261.1 + 137009 0.66 0.958267
Target:  5'- uGCGgccggagaGCGCGgccaGCagaACGGCGUCgGUGGAg -3'
miRNA:   3'- gCGU--------UGCGCa---UGg--UGUCGCAG-UACCU- -5'
23640 3' -53.7 NC_005261.1 + 64905 0.66 0.958267
Target:  5'- aGCAGCGCGUGgUuCAGCGcggCGUGc- -3'
miRNA:   3'- gCGUUGCGCAUgGuGUCGCa--GUACcu -5'
23640 3' -53.7 NC_005261.1 + 79844 0.66 0.958267
Target:  5'- gCGCAGCGCuaGCCGCcGCG-C-UGGGg -3'
miRNA:   3'- -GCGUUGCGcaUGGUGuCGCaGuACCU- -5'
23640 3' -53.7 NC_005261.1 + 68997 0.66 0.958267
Target:  5'- gGCcGCGCGggcGCCGCGGCuUCGuUGGc -3'
miRNA:   3'- gCGuUGCGCa--UGGUGUCGcAGU-ACCu -5'
23640 3' -53.7 NC_005261.1 + 134752 0.66 0.958267
Target:  5'- gGCAccCGCGacCCGCGGCGgCAUGGc -3'
miRNA:   3'- gCGUu-GCGCauGGUGUCGCaGUACCu -5'
23640 3' -53.7 NC_005261.1 + 125447 0.66 0.958267
Target:  5'- aGCGGCGU---CCAUAGCGUCuaaGGGc -3'
miRNA:   3'- gCGUUGCGcauGGUGUCGCAGua-CCU- -5'
23640 3' -53.7 NC_005261.1 + 12571 0.66 0.958267
Target:  5'- gGCAACGCGggGCCGagaggggcgccUAGCGgaggAUGGAc -3'
miRNA:   3'- gCGUUGCGCa-UGGU-----------GUCGCag--UACCU- -5'
23640 3' -53.7 NC_005261.1 + 83717 0.66 0.958267
Target:  5'- gCGCAccaugaGCGCGUuuaGCUugACGGCGUCGaGGu -3'
miRNA:   3'- -GCGU------UGCGCA---UGG--UGUCGCAGUaCCu -5'
23640 3' -53.7 NC_005261.1 + 58068 0.66 0.958267
Target:  5'- gGUGACGCGgACgGCGGCGcCA-GGGc -3'
miRNA:   3'- gCGUUGCGCaUGgUGUCGCaGUaCCU- -5'
23640 3' -53.7 NC_005261.1 + 75323 0.66 0.95751
Target:  5'- gGCGGCGCGcggagcccugugACCuucguCGGCcUCGUGGAg -3'
miRNA:   3'- gCGUUGCGCa-----------UGGu----GUCGcAGUACCU- -5'
23640 3' -53.7 NC_005261.1 + 17168 0.66 0.957128
Target:  5'- cCGCGGCGCGggcgugggcagcccUGCCGCGGCGgcgagCAg--- -3'
miRNA:   3'- -GCGUUGCGC--------------AUGGUGUCGCa----GUaccu -5'
23640 3' -53.7 NC_005261.1 + 115300 0.66 0.95439
Target:  5'- cCGCAACGCGUcgGCgCACGucugcGCGaUCggGGGg -3'
miRNA:   3'- -GCGUUGCGCA--UG-GUGU-----CGC-AGuaCCU- -5'
23640 3' -53.7 NC_005261.1 + 64985 0.66 0.95439
Target:  5'- cCGCAGCGCGUGCa--GGUGcUCcaGGAg -3'
miRNA:   3'- -GCGUUGCGCAUGgugUCGC-AGuaCCU- -5'
23640 3' -53.7 NC_005261.1 + 102863 0.66 0.95439
Target:  5'- aGCAGCGCGU-CCAggaaGGCGaacUCGggcgGGAg -3'
miRNA:   3'- gCGUUGCGCAuGGUg---UCGC---AGUa---CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.