miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23640 5' -56.7 NC_005261.1 + 83671 0.66 0.84325
Target:  5'- ------cGCGCGCCU-GGGCGCGc-- -3'
miRNA:   3'- ucagauaCGCGCGGAgUCCGCGCaaa -5'
23640 5' -56.7 NC_005261.1 + 4512 0.66 0.834913
Target:  5'- cAGUC---GCGCGCCcgcgCGGGCGCc--- -3'
miRNA:   3'- -UCAGauaCGCGCGGa---GUCCGCGcaaa -5'
23640 5' -56.7 NC_005261.1 + 19061 0.66 0.834913
Target:  5'- gGGUacgggcUGCGCGgCUCucGGCGCGUg- -3'
miRNA:   3'- -UCAgau---ACGCGCgGAGu-CCGCGCAaa -5'
23640 5' -56.7 NC_005261.1 + 29563 0.66 0.834913
Target:  5'- cAG-CUG-GCGCGCCUgcugCAgcGGCGCGUg- -3'
miRNA:   3'- -UCaGAUaCGCGCGGA----GU--CCGCGCAaa -5'
23640 5' -56.7 NC_005261.1 + 133842 0.66 0.834913
Target:  5'- ----cGUGCGCGCCguggCcGGCGCGc-- -3'
miRNA:   3'- ucagaUACGCGCGGa---GuCCGCGCaaa -5'
23640 5' -56.7 NC_005261.1 + 73202 0.66 0.826384
Target:  5'- aGGUUggccccGgGCGCCUCgagGGGCGCGg-- -3'
miRNA:   3'- -UCAGaua---CgCGCGGAG---UCCGCGCaaa -5'
23640 5' -56.7 NC_005261.1 + 87416 0.66 0.817671
Target:  5'- cGUCgacggGCGCGCCggcgaAGGCGCc--- -3'
miRNA:   3'- uCAGaua--CGCGCGGag---UCCGCGcaaa -5'
23640 5' -56.7 NC_005261.1 + 130611 0.66 0.817671
Target:  5'- cGUCUuUGCcuGCGCCUUcaacagcgcgcgGGGCGCGc-- -3'
miRNA:   3'- uCAGAuACG--CGCGGAG------------UCCGCGCaaa -5'
23640 5' -56.7 NC_005261.1 + 134092 0.66 0.817671
Target:  5'- gAGcUCUcgGCGCGCC---GGCGCGc-- -3'
miRNA:   3'- -UC-AGAuaCGCGCGGaguCCGCGCaaa -5'
23640 5' -56.7 NC_005261.1 + 69221 0.66 0.808784
Target:  5'- cGGgagCUGUGCGCGCUg-GGGCG-GUUc -3'
miRNA:   3'- -UCa--GAUACGCGCGGagUCCGCgCAAa -5'
23640 5' -56.7 NC_005261.1 + 54891 0.67 0.79973
Target:  5'- cGUCggcgcgcGCGUGCCgCAGcGCGCGUa- -3'
miRNA:   3'- uCAGaua----CGCGCGGaGUC-CGCGCAaa -5'
23640 5' -56.7 NC_005261.1 + 13058 0.67 0.790518
Target:  5'- ------cGCGCGCCccugcCGGGCGCGUc- -3'
miRNA:   3'- ucagauaCGCGCGGa----GUCCGCGCAaa -5'
23640 5' -56.7 NC_005261.1 + 102355 0.67 0.787725
Target:  5'- cGUCgaaggcggaGCGCGCCUCAacgcgcuccagcgcGGCGCGc-- -3'
miRNA:   3'- uCAGaua------CGCGCGGAGU--------------CCGCGCaaa -5'
23640 5' -56.7 NC_005261.1 + 58288 0.67 0.781157
Target:  5'- gGGcCg--GCGCGCCgggGGGCGCGg-- -3'
miRNA:   3'- -UCaGauaCGCGCGGag-UCCGCGCaaa -5'
23640 5' -56.7 NC_005261.1 + 66287 0.67 0.76203
Target:  5'- cGG-CUGUcGCaGUGCgUCAGGCGCGg-- -3'
miRNA:   3'- -UCaGAUA-CG-CGCGgAGUCCGCGCaaa -5'
23640 5' -56.7 NC_005261.1 + 50902 0.67 0.76106
Target:  5'- uGGUCaccuugaUcgGCGcCGCCUCgccGGGCGCGg-- -3'
miRNA:   3'- -UCAG-------AuaCGC-GCGGAG---UCCGCGCaaa -5'
23640 5' -56.7 NC_005261.1 + 14174 0.67 0.752282
Target:  5'- ------cGCGCGUCUCGGGgCGCGg-- -3'
miRNA:   3'- ucagauaCGCGCGGAGUCC-GCGCaaa -5'
23640 5' -56.7 NC_005261.1 + 55265 0.67 0.752282
Target:  5'- aGGUCUGcgcccccugGCGCGCCggaggCGGGgGCGc-- -3'
miRNA:   3'- -UCAGAUa--------CGCGCGGa----GUCCgCGCaaa -5'
23640 5' -56.7 NC_005261.1 + 134193 0.67 0.752282
Target:  5'- gGGcCUG-GCGCGgCUCGGcGCGCGg-- -3'
miRNA:   3'- -UCaGAUaCGCGCgGAGUC-CGCGCaaa -5'
23640 5' -56.7 NC_005261.1 + 3539 0.68 0.702088
Target:  5'- cGcCUcgGCGCGCagcgcggCGGGCGCGg-- -3'
miRNA:   3'- uCaGAuaCGCGCGga-----GUCCGCGCaaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.