miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23641 3' -51.7 NC_005261.1 + 93857 0.66 0.987685
Target:  5'- -cAGUCCACGAgGCGCGcGCa------ -3'
miRNA:   3'- guUCAGGUGCUgCGCGC-UGaacuucu -5'
23641 3' -51.7 NC_005261.1 + 130098 0.66 0.987685
Target:  5'- gUAGGUCCGCGccaGCGacuGCGcCUUGgcGAg -3'
miRNA:   3'- -GUUCAGGUGC---UGCg--CGCuGAACuuCU- -5'
23641 3' -51.7 NC_005261.1 + 135396 0.66 0.986053
Target:  5'- -uGGUCCACGGC-CGCGACc------ -3'
miRNA:   3'- guUCAGGUGCUGcGCGCUGaacuucu -5'
23641 3' -51.7 NC_005261.1 + 1107 0.66 0.986053
Target:  5'- --cGUCCGagGACGCGgaCGACgagGAGGAc -3'
miRNA:   3'- guuCAGGUg-CUGCGC--GCUGaa-CUUCU- -5'
23641 3' -51.7 NC_005261.1 + 31566 0.66 0.986053
Target:  5'- cCGGGUCCugGACGgGCGcGCcgGAcguGAg -3'
miRNA:   3'- -GUUCAGGugCUGCgCGC-UGaaCUu--CU- -5'
23641 3' -51.7 NC_005261.1 + 59037 0.66 0.986053
Target:  5'- aCGGGUgccgCCGCGcgagcucagcGCGCGCGGCcgcGGAGAg -3'
miRNA:   3'- -GUUCA----GGUGC----------UGCGCGCUGaa-CUUCU- -5'
23641 3' -51.7 NC_005261.1 + 5286 0.66 0.986053
Target:  5'- -cGG-CCGCGguGCGCGCGGgUcccUGGAGAg -3'
miRNA:   3'- guUCaGGUGC--UGCGCGCUgA---ACUUCU- -5'
23641 3' -51.7 NC_005261.1 + 73653 0.66 0.98426
Target:  5'- --cGUCCAgguaGACGCGCacGACgcgGAGGGc -3'
miRNA:   3'- guuCAGGUg---CUGCGCG--CUGaa-CUUCU- -5'
23641 3' -51.7 NC_005261.1 + 25384 0.66 0.98426
Target:  5'- -----gCACGGCGCGCGGgUcgGggGAg -3'
miRNA:   3'- guucagGUGCUGCGCGCUgAa-CuuCU- -5'
23641 3' -51.7 NC_005261.1 + 54738 0.66 0.982297
Target:  5'- cCGAGUCCgACGaACGCGCG-CUcGAu-- -3'
miRNA:   3'- -GUUCAGG-UGC-UGCGCGCuGAaCUucu -5'
23641 3' -51.7 NC_005261.1 + 100745 0.66 0.982297
Target:  5'- ----gCgGCGGCGCGCGgcacgaGCUUGAAGu -3'
miRNA:   3'- guucaGgUGCUGCGCGC------UGAACUUCu -5'
23641 3' -51.7 NC_005261.1 + 87158 0.66 0.982297
Target:  5'- -uGGcCCGCuGGCGCGCG--UUGAAGGg -3'
miRNA:   3'- guUCaGGUG-CUGCGCGCugAACUUCU- -5'
23641 3' -51.7 NC_005261.1 + 20996 0.66 0.980156
Target:  5'- ----cCCuuaGACGCGCGcCUUGggGGc -3'
miRNA:   3'- guucaGGug-CUGCGCGCuGAACuuCU- -5'
23641 3' -51.7 NC_005261.1 + 108757 0.66 0.980156
Target:  5'- --cGUCCGCGGCGCGCcGCg------ -3'
miRNA:   3'- guuCAGGUGCUGCGCGcUGaacuucu -5'
23641 3' -51.7 NC_005261.1 + 84979 0.66 0.980156
Target:  5'- --cGUCCGCGAUGCGcCGGCg------ -3'
miRNA:   3'- guuCAGGUGCUGCGC-GCUGaacuucu -5'
23641 3' -51.7 NC_005261.1 + 30378 0.67 0.977827
Target:  5'- cCGGGcgCCGCGGCGCGgGuggaggUGGAGGa -3'
miRNA:   3'- -GUUCa-GGUGCUGCGCgCuga---ACUUCU- -5'
23641 3' -51.7 NC_005261.1 + 38949 0.67 0.977827
Target:  5'- gCGGG-CCGCGGCGCGCgGGCUg----- -3'
miRNA:   3'- -GUUCaGGUGCUGCGCG-CUGAacuucu -5'
23641 3' -51.7 NC_005261.1 + 74338 0.67 0.977827
Target:  5'- cCGAGaCCGCaGGCGCGgCGGCg-GAAGGg -3'
miRNA:   3'- -GUUCaGGUG-CUGCGC-GCUGaaCUUCU- -5'
23641 3' -51.7 NC_005261.1 + 132100 0.67 0.977827
Target:  5'- gGAGggcggCCGCGACGCGCucg-UGGAGc -3'
miRNA:   3'- gUUCa----GGUGCUGCGCGcugaACUUCu -5'
23641 3' -51.7 NC_005261.1 + 29203 0.67 0.975303
Target:  5'- --cGcCCGCGcggGCGCGCGACU-GggGc -3'
miRNA:   3'- guuCaGGUGC---UGCGCGCUGAaCuuCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.