miRNA display CGI


Results 21 - 40 of 333 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23641 5' -60.6 NC_005261.1 + 28198 0.66 0.711865
Target:  5'- -----gCCGGCgGCcucGCCGCCGCUGc -3'
miRNA:   3'- gaagaaGGUCGgCGu--CGGCGGCGGCc -5'
23641 5' -60.6 NC_005261.1 + 86976 0.66 0.711865
Target:  5'- ----gUCCGGCgGCAGCaCGgCGCCc- -3'
miRNA:   3'- gaagaAGGUCGgCGUCG-GCgGCGGcc -5'
23641 5' -60.6 NC_005261.1 + 82604 0.66 0.711865
Target:  5'- gCUgg-UCCGGgCGCGugaGCCGCCGGa -3'
miRNA:   3'- -GAagaAGGUCgGCGUcggCGGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 31731 0.66 0.711865
Target:  5'- -----aCUGGCCGCgcgauGGCCcgGCCGUCGGg -3'
miRNA:   3'- gaagaaGGUCGGCG-----UCGG--CGGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 104352 0.66 0.711865
Target:  5'- -gUCgcgCagcGCCGCccgcgagaacAGCCGCCGgCCGGa -3'
miRNA:   3'- gaAGaa-Ggu-CGGCG----------UCGGCGGC-GGCC- -5'
23641 5' -60.6 NC_005261.1 + 114346 0.66 0.702125
Target:  5'- -cUCgagCGGCgCGUGGCCGCgGCCGa -3'
miRNA:   3'- gaAGaagGUCG-GCGUCGGCGgCGGCc -5'
23641 5' -60.6 NC_005261.1 + 78138 0.66 0.702125
Target:  5'- -----cCCcGCCGCcccggcgcccGCCGCUGCCGGc -3'
miRNA:   3'- gaagaaGGuCGGCGu---------CGGCGGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 13928 0.66 0.702125
Target:  5'- -aUCUgcaccCCGGUCGCguugcGGCCcaGCCGCgCGGa -3'
miRNA:   3'- gaAGAa----GGUCGGCG-----UCGG--CGGCG-GCC- -5'
23641 5' -60.6 NC_005261.1 + 109044 0.66 0.702125
Target:  5'- ------gCAGCCGC-GCgGCCGCCaGGu -3'
miRNA:   3'- gaagaagGUCGGCGuCGgCGGCGG-CC- -5'
23641 5' -60.6 NC_005261.1 + 62056 0.66 0.702125
Target:  5'- ----cUCCAGgCGCAGCaGCUGCCc- -3'
miRNA:   3'- gaagaAGGUCgGCGUCGgCGGCGGcc -5'
23641 5' -60.6 NC_005261.1 + 62432 0.66 0.702125
Target:  5'- -----gCCAGCgCG-AGCCgGUCGCCGGg -3'
miRNA:   3'- gaagaaGGUCG-GCgUCGG-CGGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 40653 0.66 0.701148
Target:  5'- ----gUCCAGCgucgacaGCAGCuccgcgaCGCCGUCGGg -3'
miRNA:   3'- gaagaAGGUCGg------CGUCG-------GCGGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 102714 0.66 0.69233
Target:  5'- -gUCUccgCCGcGuCCGCGcCCGCCGCCaGGg -3'
miRNA:   3'- gaAGAa--GGU-C-GGCGUcGGCGGCGG-CC- -5'
23641 5' -60.6 NC_005261.1 + 32314 0.66 0.69233
Target:  5'- -----gCCGccGCCGCGGCCGCggCGcCCGGc -3'
miRNA:   3'- gaagaaGGU--CGGCGUCGGCG--GC-GGCC- -5'
23641 5' -60.6 NC_005261.1 + 123008 0.66 0.69233
Target:  5'- ------aCGGCCGCGGCCGUggcguccgcgagCGUCGGc -3'
miRNA:   3'- gaagaagGUCGGCGUCGGCG------------GCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 102163 0.66 0.69233
Target:  5'- --gCUgcgCCAGCgGCGGCgGCaCGUCGa -3'
miRNA:   3'- gaaGAa--GGUCGgCGUCGgCG-GCGGCc -5'
23641 5' -60.6 NC_005261.1 + 99479 0.66 0.69233
Target:  5'- --gCUggCC-GCUGCGGCCagcGCCGCCGc -3'
miRNA:   3'- gaaGAa-GGuCGGCGUCGG---CGGCGGCc -5'
23641 5' -60.6 NC_005261.1 + 86924 0.66 0.69233
Target:  5'- ----gUCCA-CCGCcGCCGCCGCgcgCGGc -3'
miRNA:   3'- gaagaAGGUcGGCGuCGGCGGCG---GCC- -5'
23641 5' -60.6 NC_005261.1 + 112955 0.66 0.69233
Target:  5'- aCUUCgccgcgcugUCCacggcGGCCGCcaCCGCCGCCa- -3'
miRNA:   3'- -GAAGa--------AGG-----UCGGCGucGGCGGCGGcc -5'
23641 5' -60.6 NC_005261.1 + 107113 0.66 0.69233
Target:  5'- -----cCCAGCCGCGccaCCGC-GCCGGc -3'
miRNA:   3'- gaagaaGGUCGGCGUc--GGCGgCGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.