miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23642 3' -59.9 NC_005261.1 + 55600 1.1 0.000821
Target:  5'- cGCCCAUGCGCUCCUCCUGGUCCAGCAg -3'
miRNA:   3'- -CGGGUACGCGAGGAGGACCAGGUCGU- -5'
23642 3' -59.9 NC_005261.1 + 108265 0.74 0.256364
Target:  5'- cGgCCA-GCGuCUCCacggCCUGGUCCGGCGu -3'
miRNA:   3'- -CgGGUaCGC-GAGGa---GGACCAGGUCGU- -5'
23642 3' -59.9 NC_005261.1 + 51910 0.73 0.308666
Target:  5'- cGCCCggGCGCgcagcggCCgcggCCUGGUCCcGCu -3'
miRNA:   3'- -CGGGuaCGCGa------GGa---GGACCAGGuCGu -5'
23642 3' -59.9 NC_005261.1 + 101377 0.73 0.322952
Target:  5'- aGCUCcgGCGcCUCCUCCacGGccgCCAGCAg -3'
miRNA:   3'- -CGGGuaCGC-GAGGAGGa-CCa--GGUCGU- -5'
23642 3' -59.9 NC_005261.1 + 106588 0.72 0.368726
Target:  5'- cGCCgCGcgGCGCUCCUCCUGGaccucgucCCAGaCGc -3'
miRNA:   3'- -CGG-GUa-CGCGAGGAGGACCa-------GGUC-GU- -5'
23642 3' -59.9 NC_005261.1 + 84536 0.71 0.384942
Target:  5'- gGUCCAUGUGCUCCacaCgcgGGcCCAGCGc -3'
miRNA:   3'- -CGGGUACGCGAGGag-Ga--CCaGGUCGU- -5'
23642 3' -59.9 NC_005261.1 + 108663 0.71 0.401622
Target:  5'- aGCCCcgGCGUcgcgUCCUCgUcGUCCGGCu -3'
miRNA:   3'- -CGGGuaCGCG----AGGAGgAcCAGGUCGu -5'
23642 3' -59.9 NC_005261.1 + 46335 0.71 0.418755
Target:  5'- uGgCCAUGCGC-CCaaaCUcGGUCCGGCAg -3'
miRNA:   3'- -CgGGUACGCGaGGag-GA-CCAGGUCGU- -5'
23642 3' -59.9 NC_005261.1 + 100982 0.71 0.418755
Target:  5'- cGCCCAgcgcgucgccGCGCUCCgccagCCgcgcGUCCAGCGc -3'
miRNA:   3'- -CGGGUa---------CGCGAGGa----GGac--CAGGUCGU- -5'
23642 3' -59.9 NC_005261.1 + 43676 0.7 0.445267
Target:  5'- cGCCCAUGCagcgGCUCCacggcgaggUCCUGG-CCuGCc -3'
miRNA:   3'- -CGGGUACG----CGAGG---------AGGACCaGGuCGu -5'
23642 3' -59.9 NC_005261.1 + 5133 0.7 0.445267
Target:  5'- gGCCCGccgGCGCUCgCgcgCCUcGGcCCGGCGg -3'
miRNA:   3'- -CGGGUa--CGCGAG-Ga--GGA-CCaGGUCGU- -5'
23642 3' -59.9 NC_005261.1 + 88768 0.7 0.445267
Target:  5'- gGCgC-UGCGCUCCUcggcCCUGGccgCCGGCGc -3'
miRNA:   3'- -CGgGuACGCGAGGA----GGACCa--GGUCGU- -5'
23642 3' -59.9 NC_005261.1 + 113089 0.7 0.463454
Target:  5'- gGCCUgcacaCGCUCCUCCUGGagcUCGGCAu -3'
miRNA:   3'- -CGGGuac--GCGAGGAGGACCa--GGUCGU- -5'
23642 3' -59.9 NC_005261.1 + 120193 0.7 0.472692
Target:  5'- cGCCCAaccUGCGCUgcgaggUUUCCUGGuUCCAGa- -3'
miRNA:   3'- -CGGGU---ACGCGA------GGAGGACC-AGGUCgu -5'
23642 3' -59.9 NC_005261.1 + 101115 0.69 0.510526
Target:  5'- cGCCUugGCGC-CCUCgUGGUCCucGCGc -3'
miRNA:   3'- -CGGGuaCGCGaGGAGgACCAGGu-CGU- -5'
23642 3' -59.9 NC_005261.1 + 125014 0.69 0.529913
Target:  5'- gGgCCGUGCGCUCCagCaGGcUCCGGUg -3'
miRNA:   3'- -CgGGUACGCGAGGagGaCC-AGGUCGu -5'
23642 3' -59.9 NC_005261.1 + 112875 0.69 0.529913
Target:  5'- cGCCCAcgGCGUgugCaaCCUGG-CCAGCGu -3'
miRNA:   3'- -CGGGUa-CGCGa--GgaGGACCaGGUCGU- -5'
23642 3' -59.9 NC_005261.1 + 70834 0.69 0.529913
Target:  5'- cGCCgGcGCGCgcguacgCCUCCUcaGGUCCAGg- -3'
miRNA:   3'- -CGGgUaCGCGa------GGAGGA--CCAGGUCgu -5'
23642 3' -59.9 NC_005261.1 + 101890 0.69 0.539708
Target:  5'- cGCCCAgccgcgcGCGCUCCUCCUcgaaagccGcGUgcccCCGGCGg -3'
miRNA:   3'- -CGGGUa------CGCGAGGAGGA--------C-CA----GGUCGU- -5'
23642 3' -59.9 NC_005261.1 + 73640 0.68 0.559474
Target:  5'- aGCCCGUGCGCgCCgUCCaGGUagaCGcGCAc -3'
miRNA:   3'- -CGGGUACGCGaGG-AGGaCCAg--GU-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.