Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23642 | 3' | -59.9 | NC_005261.1 | + | 182 | 0.66 | 0.690345 |
Target: 5'- cGCCCcugGUGCUCC-CggGG-CCAGCGg -3' miRNA: 3'- -CGGGua-CGCGAGGaGgaCCaGGUCGU- -5' |
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23642 | 3' | -59.9 | NC_005261.1 | + | 2260 | 0.67 | 0.639991 |
Target: 5'- gGCCgCcgGCGCUCgUCCUcgccGGgcggcgccgCCAGCGc -3' miRNA: 3'- -CGG-GuaCGCGAGgAGGA----CCa--------GGUCGU- -5' |
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23642 | 3' | -59.9 | NC_005261.1 | + | 2908 | 0.68 | 0.569434 |
Target: 5'- gGCCCccccaGCUCCUCC-GGccCCAGCAc -3' miRNA: 3'- -CGGGuacg-CGAGGAGGaCCa-GGUCGU- -5' |
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23642 | 3' | -59.9 | NC_005261.1 | + | 5133 | 0.7 | 0.445267 |
Target: 5'- gGCCCGccgGCGCUCgCgcgCCUcGGcCCGGCGg -3' miRNA: 3'- -CGGGUa--CGCGAG-Ga--GGA-CCaGGUCGU- -5' |
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23642 | 3' | -59.9 | NC_005261.1 | + | 18201 | 0.67 | 0.639991 |
Target: 5'- cCCCAgggccGCGCcgaUCC-CCcGGUCCAGCc -3' miRNA: 3'- cGGGUa----CGCG---AGGaGGaCCAGGUCGu -5' |
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23642 | 3' | -59.9 | NC_005261.1 | + | 20216 | 0.68 | 0.569434 |
Target: 5'- gGCCCc-GCGC-CCgcugCCUGG-CCAGCc -3' miRNA: 3'- -CGGGuaCGCGaGGa---GGACCaGGUCGu -5' |
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23642 | 3' | -59.9 | NC_005261.1 | + | 29278 | 0.67 | 0.619751 |
Target: 5'- gGCCCGcUGCugacgccCUCCggcgaggCCUGGcCCGGCAg -3' miRNA: 3'- -CGGGU-ACGc------GAGGa------GGACCaGGUCGU- -5' |
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23642 | 3' | -59.9 | NC_005261.1 | + | 30299 | 0.68 | 0.599547 |
Target: 5'- gGCCCGcGCGCUCUUCagcccgCCGGCGg -3' miRNA: 3'- -CGGGUaCGCGAGGAGgacca-GGUCGU- -5' |
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23642 | 3' | -59.9 | NC_005261.1 | + | 41121 | 0.66 | 0.710214 |
Target: 5'- gGCCCGaGCGCuUCCUgCgUGGcgcgcgCCAGCc -3' miRNA: 3'- -CGGGUaCGCG-AGGA-GgACCa-----GGUCGu -5' |
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23642 | 3' | -59.9 | NC_005261.1 | + | 43491 | 0.66 | 0.700307 |
Target: 5'- gGCCUucgcgGCGgaCCUCCUGcGcugcgCCAGCGc -3' miRNA: 3'- -CGGGua---CGCgaGGAGGAC-Ca----GGUCGU- -5' |
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23642 | 3' | -59.9 | NC_005261.1 | + | 43676 | 0.7 | 0.445267 |
Target: 5'- cGCCCAUGCagcgGCUCCacggcgaggUCCUGG-CCuGCc -3' miRNA: 3'- -CGGGUACG----CGAGG---------AGGACCaGGuCGu -5' |
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23642 | 3' | -59.9 | NC_005261.1 | + | 46335 | 0.71 | 0.418755 |
Target: 5'- uGgCCAUGCGC-CCaaaCUcGGUCCGGCAg -3' miRNA: 3'- -CgGGUACGCGaGGag-GA-CCAGGUCGU- -5' |
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23642 | 3' | -59.9 | NC_005261.1 | + | 51910 | 0.73 | 0.308666 |
Target: 5'- cGCCCggGCGCgcagcggCCgcggCCUGGUCCcGCu -3' miRNA: 3'- -CGGGuaCGCGa------GGa---GGACCAGGuCGu -5' |
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23642 | 3' | -59.9 | NC_005261.1 | + | 55600 | 1.1 | 0.000821 |
Target: 5'- cGCCCAUGCGCUCCUCCUGGUCCAGCAg -3' miRNA: 3'- -CGGGUACGCGAGGAGGACCAGGUCGU- -5' |
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23642 | 3' | -59.9 | NC_005261.1 | + | 64514 | 0.66 | 0.720055 |
Target: 5'- gGCCCGcggGCgGCUCCUCgUcggggggcaGGUCCGGg- -3' miRNA: 3'- -CGGGUa--CG-CGAGGAGgA---------CCAGGUCgu -5' |
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23642 | 3' | -59.9 | NC_005261.1 | + | 70732 | 0.67 | 0.650106 |
Target: 5'- cGUCCAgcacGUGCgCCUCCUcgagcaGGUCCAGgCGg -3' miRNA: 3'- -CGGGUa---CGCGaGGAGGA------CCAGGUC-GU- -5' |
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23642 | 3' | -59.9 | NC_005261.1 | + | 70834 | 0.69 | 0.529913 |
Target: 5'- cGCCgGcGCGCgcguacgCCUCCUcaGGUCCAGg- -3' miRNA: 3'- -CGGgUaCGCGa------GGAGGA--CCAGGUCgu -5' |
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23642 | 3' | -59.9 | NC_005261.1 | + | 73640 | 0.68 | 0.559474 |
Target: 5'- aGCCCGUGCGCgCCgUCCaGGUagaCGcGCAc -3' miRNA: 3'- -CGGGUACGCGaGG-AGGaCCAg--GU-CGU- -5' |
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23642 | 3' | -59.9 | NC_005261.1 | + | 83594 | 0.66 | 0.720055 |
Target: 5'- cGCCagcaGCGCgucgCuCUCCgccgcggcgUGGUCCAGCGc -3' miRNA: 3'- -CGGgua-CGCGa---G-GAGG---------ACCAGGUCGU- -5' |
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23642 | 3' | -59.9 | NC_005261.1 | + | 84536 | 0.71 | 0.384942 |
Target: 5'- gGUCCAUGUGCUCCacaCgcgGGcCCAGCGc -3' miRNA: 3'- -CGGGUACGCGAGGag-Ga--CCaGGUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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