miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23642 5' -54.4 NC_005261.1 + 35148 0.65 0.941604
Target:  5'- cCCGCGgCG-CAAgcACGCgcaugcggacccgaGCGCAGAGAa -3'
miRNA:   3'- aGGCGCaGCaGUU--UGCG--------------CGCGUCUUU- -5'
23642 5' -54.4 NC_005261.1 + 87739 0.66 0.93824
Target:  5'- gCCGCGUCG-CAGACGUacacgaagccCGCGGGc- -3'
miRNA:   3'- aGGCGCAGCaGUUUGCGc---------GCGUCUuu -5'
23642 5' -54.4 NC_005261.1 + 67104 0.66 0.93824
Target:  5'- -aCGCGgugCGggcGGCGCGCGCAGu-- -3'
miRNA:   3'- agGCGCa--GCaguUUGCGCGCGUCuuu -5'
23642 5' -54.4 NC_005261.1 + 83115 0.66 0.93824
Target:  5'- gCCGcCGcCGcCAGccGCGCGCGCGGc-- -3'
miRNA:   3'- aGGC-GCaGCaGUU--UGCGCGCGUCuuu -5'
23642 5' -54.4 NC_005261.1 + 73647 0.66 0.93824
Target:  5'- -gCGCGcCGUCcagguAGACGCGCacgacGCGGAGGg -3'
miRNA:   3'- agGCGCaGCAG-----UUUGCGCG-----CGUCUUU- -5'
23642 5' -54.4 NC_005261.1 + 88356 0.66 0.935261
Target:  5'- gCCGCGgCGUucacaucggaacggcCGAGCGCGCGCccaAGGu- -3'
miRNA:   3'- aGGCGCaGCA---------------GUUUGCGCGCG---UCUuu -5'
23642 5' -54.4 NC_005261.1 + 91763 0.66 0.933224
Target:  5'- -gCGCaaaGUCGUCAAACGCuGCGUAc--- -3'
miRNA:   3'- agGCG---CAGCAGUUUGCG-CGCGUcuuu -5'
23642 5' -54.4 NC_005261.1 + 3864 0.66 0.933224
Target:  5'- gCCGCG-CGgccggCGAGCacgGCGCGCAGc-- -3'
miRNA:   3'- aGGCGCaGCa----GUUUG---CGCGCGUCuuu -5'
23642 5' -54.4 NC_005261.1 + 57907 0.66 0.933224
Target:  5'- aCCGCGUCG-CGGaagacggcccgcACGCGCGUg---- -3'
miRNA:   3'- aGGCGCAGCaGUU------------UGCGCGCGucuuu -5'
23642 5' -54.4 NC_005261.1 + 129330 0.66 0.930095
Target:  5'- gCCGCGUCGcCGAccucgccgcgguagcGCccccuuccGCGCGCGGGu- -3'
miRNA:   3'- aGGCGCAGCaGUU---------------UG--------CGCGCGUCUuu -5'
23642 5' -54.4 NC_005261.1 + 20109 0.66 0.927959
Target:  5'- uUCCGCGg---CAAG-GCGCGCGGGc- -3'
miRNA:   3'- -AGGCGCagcaGUUUgCGCGCGUCUuu -5'
23642 5' -54.4 NC_005261.1 + 11277 0.66 0.927959
Target:  5'- gUCCGUccGUcCGUCcguucGCGCGuCGCAGggGa -3'
miRNA:   3'- -AGGCG--CA-GCAGuu---UGCGC-GCGUCuuU- -5'
23642 5' -54.4 NC_005261.1 + 96604 0.66 0.927959
Target:  5'- gCCGCagcaCGUCGcgcGugGCGCGCAGc-- -3'
miRNA:   3'- aGGCGca--GCAGU---UugCGCGCGUCuuu -5'
23642 5' -54.4 NC_005261.1 + 49299 0.66 0.927959
Target:  5'- cCCGCGgCGgUGAGCGCcGCGCAGc-- -3'
miRNA:   3'- aGGCGCaGCaGUUUGCG-CGCGUCuuu -5'
23642 5' -54.4 NC_005261.1 + 105657 0.66 0.927959
Target:  5'- aCCGCGUCGc----CG-GCGCGGAAGa -3'
miRNA:   3'- aGGCGCAGCaguuuGCgCGCGUCUUU- -5'
23642 5' -54.4 NC_005261.1 + 72183 0.66 0.922443
Target:  5'- gUCCGagaCGUUGgcggCGGccGCGCGCGgCAGAAAg -3'
miRNA:   3'- -AGGC---GCAGCa---GUU--UGCGCGC-GUCUUU- -5'
23642 5' -54.4 NC_005261.1 + 103015 0.66 0.922443
Target:  5'- cUCCGCGUgGcUCucgaaGAACGCGCgggccGCAGGGc -3'
miRNA:   3'- -AGGCGCAgC-AG-----UUUGCGCG-----CGUCUUu -5'
23642 5' -54.4 NC_005261.1 + 131220 0.66 0.916678
Target:  5'- cCCGCGUaCGUgGc-CGCGCGCAucGAGg -3'
miRNA:   3'- aGGCGCA-GCAgUuuGCGCGCGU--CUUu -5'
23642 5' -54.4 NC_005261.1 + 49987 0.66 0.916678
Target:  5'- gCCGcCGUCGUCccccccGAGCcgcgccgccaGCGCGCGGGc- -3'
miRNA:   3'- aGGC-GCAGCAG------UUUG----------CGCGCGUCUuu -5'
23642 5' -54.4 NC_005261.1 + 108561 0.66 0.916678
Target:  5'- -aCGCGcaCGUCGugcGACGUGCGCGcGAAGg -3'
miRNA:   3'- agGCGCa-GCAGU---UUGCGCGCGU-CUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.