miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23643 3' -54.6 NC_005261.1 + 43912 0.66 0.950355
Target:  5'- aGGGCaUGCGgcacaUCgGCGACAucucgGAGACCGu -3'
miRNA:   3'- gUCUGaGCGC-----AGgCGCUGU-----UUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 60175 0.66 0.950355
Target:  5'- uGGAagCGCGUcugcgCCGCGGCGGAGAaguCCGc -3'
miRNA:   3'- gUCUgaGCGCA-----GGCGCUGUUUCU---GGC- -5'
23643 3' -54.6 NC_005261.1 + 54380 0.66 0.950355
Target:  5'- -cGGCUCgggGCGcCCGCGA---AGGCCGu -3'
miRNA:   3'- guCUGAG---CGCaGGCGCUguuUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 34364 0.66 0.950355
Target:  5'- cCGGGCgccgCGCGgcgCCGCG-CGcAGACgCGg -3'
miRNA:   3'- -GUCUGa---GCGCa--GGCGCuGUuUCUG-GC- -5'
23643 3' -54.6 NC_005261.1 + 2598 0.66 0.950355
Target:  5'- gCGGAagcCGcCGUCgGCGGCGGGGccGCCGg -3'
miRNA:   3'- -GUCUga-GC-GCAGgCGCUGUUUC--UGGC- -5'
23643 3' -54.6 NC_005261.1 + 48437 0.66 0.950355
Target:  5'- aCAG-CUCGCgGUgCGUGGCGc-GGCCGg -3'
miRNA:   3'- -GUCuGAGCG-CAgGCGCUGUuuCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 63733 0.66 0.950355
Target:  5'- -cGGCgugCGCauggCCGCGGCGGcguAGGCCGc -3'
miRNA:   3'- guCUGa--GCGca--GGCGCUGUU---UCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 98733 0.66 0.946067
Target:  5'- gGGGCaCGCGgCCGCGcggGCGuuGGCCGc -3'
miRNA:   3'- gUCUGaGCGCaGGCGC---UGUuuCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 15751 0.66 0.946067
Target:  5'- gCAGGCcgacCGCcucgCCGCGAUAcacAAGGCCGc -3'
miRNA:   3'- -GUCUGa---GCGca--GGCGCUGU---UUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 83247 0.66 0.946067
Target:  5'- aCGGACUCGCccugGUUCGCGgugacGCAGAGcuCCu -3'
miRNA:   3'- -GUCUGAGCG----CAGGCGC-----UGUUUCu-GGc -5'
23643 3' -54.6 NC_005261.1 + 107680 0.66 0.946067
Target:  5'- cCGGGCgUUGcCG-CCGCGGCGGGGgcGCCGc -3'
miRNA:   3'- -GUCUG-AGC-GCaGGCGCUGUUUC--UGGC- -5'
23643 3' -54.6 NC_005261.1 + 5256 0.66 0.946067
Target:  5'- -cGGCUCGUGcCCGCcgggaGACGccauGGCCGg -3'
miRNA:   3'- guCUGAGCGCaGGCG-----CUGUuu--CUGGC- -5'
23643 3' -54.6 NC_005261.1 + 97666 0.66 0.946067
Target:  5'- gGGGC-CgGCGUCCGCGgggcuuggGCGGGGcuGCCGg -3'
miRNA:   3'- gUCUGaG-CGCAGGCGC--------UGUUUC--UGGC- -5'
23643 3' -54.6 NC_005261.1 + 121364 0.66 0.945625
Target:  5'- aCAGGUUCGCGUacugcaggcgccCCGCGGCGgcggcgccugcccGAGugCGa -3'
miRNA:   3'- -GUCUGAGCGCA------------GGCGCUGU-------------UUCugGC- -5'
23643 3' -54.6 NC_005261.1 + 67353 0.66 0.944734
Target:  5'- cCGGGCcCGCGaaggCCGcCGGCAgcgccaccgccgcgAAGACCGc -3'
miRNA:   3'- -GUCUGaGCGCa---GGC-GCUGU--------------UUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 58089 0.66 0.941541
Target:  5'- aGGGCcCGCGUCCucggGCGGCAccaGCCGc -3'
miRNA:   3'- gUCUGaGCGCAGG----CGCUGUuucUGGC- -5'
23643 3' -54.6 NC_005261.1 + 120956 0.66 0.941541
Target:  5'- gAGGCUCGCGccCCGCGGggcgcgugccgcCGcAGGCCc -3'
miRNA:   3'- gUCUGAGCGCa-GGCGCU------------GUuUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 73493 0.66 0.941541
Target:  5'- -cGGCgCGCGgaCGCGGCGAGGAUCc -3'
miRNA:   3'- guCUGaGCGCagGCGCUGUUUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 73145 0.66 0.941541
Target:  5'- nGGGCUCGCGccgCCagGCGGCGuuguugcucGGCCGg -3'
miRNA:   3'- gUCUGAGCGCa--GG--CGCUGUuu-------CUGGC- -5'
23643 3' -54.6 NC_005261.1 + 23349 0.66 0.941541
Target:  5'- gCAGcGCgCGCGUgucggCCGUGACAAAcGCCGa -3'
miRNA:   3'- -GUC-UGaGCGCA-----GGCGCUGUUUcUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.