Results 21 - 40 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23643 | 3' | -54.6 | NC_005261.1 | + | 2598 | 0.66 | 0.950355 |
Target: 5'- gCGGAagcCGcCGUCgGCGGCGGGGccGCCGg -3' miRNA: 3'- -GUCUga-GC-GCAGgCGCUGUUUC--UGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 20013 | 0.66 | 0.936777 |
Target: 5'- -uGACcCGCacccGUCCGCGGuCAGcGGGCCGg -3' miRNA: 3'- guCUGaGCG----CAGGCGCU-GUU-UCUGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 98733 | 0.66 | 0.946067 |
Target: 5'- gGGGCaCGCGgCCGCGcggGCGuuGGCCGc -3' miRNA: 3'- gUCUGaGCGCaGGCGC---UGUuuCUGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 120956 | 0.66 | 0.941541 |
Target: 5'- gAGGCUCGCGccCCGCGGggcgcgugccgcCGcAGGCCc -3' miRNA: 3'- gUCUGAGCGCa-GGCGCU------------GUuUCUGGc -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 67353 | 0.66 | 0.944734 |
Target: 5'- cCGGGCcCGCGaaggCCGcCGGCAgcgccaccgccgcgAAGACCGc -3' miRNA: 3'- -GUCUGaGCGCa---GGC-GCUGU--------------UUCUGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 63733 | 0.66 | 0.950355 |
Target: 5'- -cGGCgugCGCauggCCGCGGCGGcguAGGCCGc -3' miRNA: 3'- guCUGa--GCGca--GGCGCUGUU---UCUGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 123246 | 0.66 | 0.940137 |
Target: 5'- cCAGGCgcgggccccgcccaUCGC--CCGUGACGAGGugCGg -3' miRNA: 3'- -GUCUG--------------AGCGcaGGCGCUGUUUCugGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 86914 | 0.66 | 0.938711 |
Target: 5'- gCGGACcCGCGUccaccgccgccgCCGCGcgcggcgggcugguCAAAGACCGu -3' miRNA: 3'- -GUCUGaGCGCA------------GGCGCu-------------GUUUCUGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 73493 | 0.66 | 0.941541 |
Target: 5'- -cGGCgCGCGgaCGCGGCGAGGAUCc -3' miRNA: 3'- guCUGaGCGCagGCGCUGUUUCUGGc -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 60175 | 0.66 | 0.950355 |
Target: 5'- uGGAagCGCGUcugcgCCGCGGCGGAGAaguCCGc -3' miRNA: 3'- gUCUgaGCGCA-----GGCGCUGUUUCU---GGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 73145 | 0.66 | 0.941541 |
Target: 5'- nGGGCUCGCGccgCCagGCGGCGuuguugcucGGCCGg -3' miRNA: 3'- gUCUGAGCGCa--GG--CGCUGUuu-------CUGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 94416 | 0.66 | 0.936777 |
Target: 5'- aGGGCgCGaCGUCCGCGGCGccGcCCc -3' miRNA: 3'- gUCUGaGC-GCAGGCGCUGUuuCuGGc -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 15751 | 0.66 | 0.946067 |
Target: 5'- gCAGGCcgacCGCcucgCCGCGAUAcacAAGGCCGc -3' miRNA: 3'- -GUCUGa---GCGca--GGCGCUGU---UUCUGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 97666 | 0.66 | 0.946067 |
Target: 5'- gGGGC-CgGCGUCCGCGgggcuuggGCGGGGcuGCCGg -3' miRNA: 3'- gUCUGaG-CGCAGGCGC--------UGUUUC--UGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 66471 | 0.66 | 0.936777 |
Target: 5'- cCAGGCgCGCGUCCucGCGguACAgcGAGAgCGg -3' miRNA: 3'- -GUCUGaGCGCAGG--CGC--UGU--UUCUgGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 54380 | 0.66 | 0.950355 |
Target: 5'- -cGGCUCgggGCGcCCGCGA---AGGCCGu -3' miRNA: 3'- guCUGAG---CGCaGGCGCUguuUCUGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 4835 | 0.66 | 0.936777 |
Target: 5'- gCAGGCggcgGCGUCCGCGccgcagccuCAAGGGCgGc -3' miRNA: 3'- -GUCUGag--CGCAGGCGCu--------GUUUCUGgC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 83247 | 0.66 | 0.946067 |
Target: 5'- aCGGACUCGCccugGUUCGCGgugacGCAGAGcuCCu -3' miRNA: 3'- -GUCUGAGCG----CAGGCGC-----UGUUUCu-GGc -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 48437 | 0.66 | 0.950355 |
Target: 5'- aCAG-CUCGCgGUgCGUGGCGc-GGCCGg -3' miRNA: 3'- -GUCuGAGCG-CAgGCGCUGUuuCUGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 58089 | 0.66 | 0.941541 |
Target: 5'- aGGGCcCGCGUCCucggGCGGCAccaGCCGc -3' miRNA: 3'- gUCUGaGCGCAGG----CGCUGUuucUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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