miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23643 3' -54.6 NC_005261.1 + 47146 0.67 0.896681
Target:  5'- aCAGcGC-CgGCGUCgGCGGCcGAGACCa -3'
miRNA:   3'- -GUC-UGaG-CGCAGgCGCUGuUUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 21772 0.67 0.926525
Target:  5'- cCGGGCgagC-CG-CCGCGGCGcGGGCCGc -3'
miRNA:   3'- -GUCUGa--GcGCaGGCGCUGUuUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 67076 0.67 0.896024
Target:  5'- gGGGCUCGCucgggcgGUCCauggcGCGACGcGGugCGg -3'
miRNA:   3'- gUCUGAGCG-------CAGG-----CGCUGUuUCugGC- -5'
23643 3' -54.6 NC_005261.1 + 49267 0.67 0.903127
Target:  5'- -cGGCgCGCacGUCCGCGAgGAAGGCg- -3'
miRNA:   3'- guCUGaGCG--CAGGCGCUgUUUCUGgc -5'
23643 3' -54.6 NC_005261.1 + 89276 0.67 0.903127
Target:  5'- aCGGGCUgGCGUUCccgGCGGCcgccaacgccGAGGACCu -3'
miRNA:   3'- -GUCUGAgCGCAGG---CGCUG----------UUUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 108177 0.67 0.903127
Target:  5'- aGGGCgCGCGgCCGCGGCuccGGGCgCGa -3'
miRNA:   3'- gUCUGaGCGCaGGCGCUGuu-UCUG-GC- -5'
23643 3' -54.6 NC_005261.1 + 107728 0.67 0.903127
Target:  5'- gCAGGCggcugCGCcucggCCGCGGgGGGGGCCa -3'
miRNA:   3'- -GUCUGa----GCGca---GGCGCUgUUUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 1711 0.67 0.915306
Target:  5'- cCGGuACUCGCG-CgGCGGCAcGGGcACCGc -3'
miRNA:   3'- -GUC-UGAGCGCaGgCGCUGU-UUC-UGGC- -5'
23643 3' -54.6 NC_005261.1 + 34207 0.67 0.915306
Target:  5'- gCAGACggCGCGUCggaCGCGgACGcAGACgCGg -3'
miRNA:   3'- -GUCUGa-GCGCAG---GCGC-UGUuUCUG-GC- -5'
23643 3' -54.6 NC_005261.1 + 1099 0.67 0.926525
Target:  5'- -cGGCUCGuCGUCCGagGACGcGGACg- -3'
miRNA:   3'- guCUGAGC-GCAGGCg-CUGUuUCUGgc -5'
23643 3' -54.6 NC_005261.1 + 29498 0.67 0.915306
Target:  5'- uGGugUaCGCGcgCCGCGACGccauGGCCu -3'
miRNA:   3'- gUCugA-GCGCa-GGCGCUGUuu--CUGGc -5'
23643 3' -54.6 NC_005261.1 + 53758 0.67 0.909336
Target:  5'- cCGGACguaCGCcg-CGCGGCAAAcGACCGg -3'
miRNA:   3'- -GUCUGa--GCGcagGCGCUGUUU-CUGGC- -5'
23643 3' -54.6 NC_005261.1 + 86199 0.67 0.909336
Target:  5'- gCGGGCUcCGCGUCgGCG-CGccGaACCGg -3'
miRNA:   3'- -GUCUGA-GCGCAGgCGCuGUuuC-UGGC- -5'
23643 3' -54.6 NC_005261.1 + 92641 0.67 0.909336
Target:  5'- gGGAC-CGgGaCCGgGACcGGGACCGg -3'
miRNA:   3'- gUCUGaGCgCaGGCgCUGuUUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 125723 0.67 0.909336
Target:  5'- gCGGGCUCGgcUGgggCCGCcGCAAggGGGCCGg -3'
miRNA:   3'- -GUCUGAGC--GCa--GGCGcUGUU--UCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 98041 0.67 0.926525
Target:  5'- gCGGuACUgGCGgCCGCGgGCGgcGGGACCGc -3'
miRNA:   3'- -GUC-UGAgCGCaGGCGC-UGU--UUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 101408 0.67 0.926525
Target:  5'- gCAGcgccGCUUGCGUCa-CGACGucGGCCGc -3'
miRNA:   3'- -GUC----UGAGCGCAGgcGCUGUuuCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 127829 0.67 0.926525
Target:  5'- --cGCUCGCGgCCGCGAgCAGcGGACgGg -3'
miRNA:   3'- gucUGAGCGCaGGCGCU-GUU-UCUGgC- -5'
23643 3' -54.6 NC_005261.1 + 136915 0.67 0.92706
Target:  5'- uGGGCcgCGCGgCCGCGGCGcauguggugguacauGGGCCGc -3'
miRNA:   3'- gUCUGa-GCGCaGGCGCUGUu--------------UCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 63025 0.67 0.928653
Target:  5'- gCGGGCgccgGCGcCCGCGGCGAGGcggucgcgcagcagcGCCGc -3'
miRNA:   3'- -GUCUGag--CGCaGGCGCUGUUUC---------------UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.