Results 61 - 80 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23643 | 3' | -54.6 | NC_005261.1 | + | 29498 | 0.67 | 0.915306 |
Target: 5'- uGGugUaCGCGcgCCGCGACGccauGGCCu -3' miRNA: 3'- gUCugA-GCGCa-GGCGCUGUuu--CUGGc -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 53758 | 0.67 | 0.909336 |
Target: 5'- cCGGACguaCGCcg-CGCGGCAAAcGACCGg -3' miRNA: 3'- -GUCUGa--GCGcagGCGCUGUUU-CUGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 86199 | 0.67 | 0.909336 |
Target: 5'- gCGGGCUcCGCGUCgGCG-CGccGaACCGg -3' miRNA: 3'- -GUCUGA-GCGCAGgCGCuGUuuC-UGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 63427 | 0.67 | 0.909336 |
Target: 5'- -cGACUCGcCGUCgC-CGGCGuAGGCCGc -3' miRNA: 3'- guCUGAGC-GCAG-GcGCUGUuUCUGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 101717 | 0.67 | 0.909336 |
Target: 5'- cCAGcuGCgccagCGCGcCCGCGAUcAGGGCCu -3' miRNA: 3'- -GUC--UGa----GCGCaGGCGCUGuUUCUGGc -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 72534 | 0.67 | 0.921036 |
Target: 5'- -cGGCUCGC-UgCGCGGCAGGGGaCGg -3' miRNA: 3'- guCUGAGCGcAgGCGCUGUUUCUgGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 98041 | 0.67 | 0.926525 |
Target: 5'- gCGGuACUgGCGgCCGCGgGCGgcGGGACCGc -3' miRNA: 3'- -GUC-UGAgCGCaGGCGC-UGU--UUCUGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 63025 | 0.67 | 0.928653 |
Target: 5'- gCGGGCgccgGCGcCCGCGGCGAGGcggucgcgcagcagcGCCGc -3' miRNA: 3'- -GUCUGag--CGCaGGCGCUGUUUC---------------UGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 136915 | 0.67 | 0.92706 |
Target: 5'- uGGGCcgCGCGgCCGCGGCGcauguggugguacauGGGCCGc -3' miRNA: 3'- gUCUGa-GCGCaGGCGCUGUu--------------UCUGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 127829 | 0.67 | 0.926525 |
Target: 5'- --cGCUCGCGgCCGCGAgCAGcGGACgGg -3' miRNA: 3'- gucUGAGCGCaGGCGCU-GUU-UCUGgC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 101408 | 0.67 | 0.926525 |
Target: 5'- gCAGcgccGCUUGCGUCa-CGACGucGGCCGc -3' miRNA: 3'- -GUC----UGAGCGCAGgcGCUGUuuCUGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 39186 | 0.67 | 0.926525 |
Target: 5'- -cGACUCGCGcCC-CGGCGAGcaGCCGc -3' miRNA: 3'- guCUGAGCGCaGGcGCUGUUUc-UGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 24415 | 0.67 | 0.926525 |
Target: 5'- gGGGCUCggauccucgguuGCgGUCCGCGGCGAuGGACg- -3' miRNA: 3'- gUCUGAG------------CG-CAGGCGCUGUU-UCUGgc -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 21772 | 0.67 | 0.926525 |
Target: 5'- cCGGGCgagC-CG-CCGCGGCGcGGGCCGc -3' miRNA: 3'- -GUCUGa--GcGCaGGCGCUGUuUCUGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 1099 | 0.67 | 0.926525 |
Target: 5'- -cGGCUCGuCGUCCGagGACGcGGACg- -3' miRNA: 3'- guCUGAGC-GCAGGCg-CUGUuUCUGgc -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 131989 | 0.67 | 0.915306 |
Target: 5'- cCAGGCcuucgcagUCGCGgaCgGCGACAAcuGGGCCGc -3' miRNA: 3'- -GUCUG--------AGCGCa-GgCGCUGUU--UCUGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 2344 | 0.68 | 0.868609 |
Target: 5'- uCGGGgUcCGCGaUCUGCGACAuccAGGCCa -3' miRNA: 3'- -GUCUgA-GCGC-AGGCGCUGUu--UCUGGc -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 127798 | 0.68 | 0.868609 |
Target: 5'- gCGGGC-CgGCG-CCGCGGCGGcGGGCCGc -3' miRNA: 3'- -GUCUGaG-CGCaGGCGCUGUU-UCUGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 16769 | 0.68 | 0.890003 |
Target: 5'- cCAG-CUCGuCGUCCGUgggguaGGCGAAGcCCGc -3' miRNA: 3'- -GUCuGAGC-GCAGGCG------CUGUUUCuGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 68113 | 0.68 | 0.889322 |
Target: 5'- uCGGGCUggagcugCGCGggCCGCGGCGcggcGACCGc -3' miRNA: 3'- -GUCUGA-------GCGCa-GGCGCUGUuu--CUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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