miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23643 3' -54.6 NC_005261.1 + 55089 1.09 0.003735
Target:  5'- gCAGACUCGCGUCCGCGACAAAGACCGg -3'
miRNA:   3'- -GUCUGAGCGCAGGCGCUGUUUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 116089 0.8 0.267521
Target:  5'- uGGAUgcCGCgGUCCGCGACGAAGAUCGg -3'
miRNA:   3'- gUCUGa-GCG-CAGGCGCUGUUUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 28789 0.77 0.420053
Target:  5'- gCGGgcGCUCGCGgCCGCGGCGGAGGCa- -3'
miRNA:   3'- -GUC--UGAGCGCaGGCGCUGUUUCUGgc -5'
23643 3' -54.6 NC_005261.1 + 130474 0.75 0.502861
Target:  5'- -cGGCUCGCGgcgugccUCgGCGGCGAGGGCCc -3'
miRNA:   3'- guCUGAGCGC-------AGgCGCUGUUUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 91688 0.75 0.523451
Target:  5'- gAGACgacgCGCGcCUGCGACAgccggcugcAAGGCCGg -3'
miRNA:   3'- gUCUGa---GCGCaGGCGCUGU---------UUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 50481 0.74 0.543353
Target:  5'- --cGCUCGCGUCCGCGGC---GGCCc -3'
miRNA:   3'- gucUGAGCGCAGGCGCUGuuuCUGGc -5'
23643 3' -54.6 NC_005261.1 + 1174 0.74 0.543353
Target:  5'- -cGGCcCGCG-CCGCGGCcGGGGCCGg -3'
miRNA:   3'- guCUGaGCGCaGGCGCUGuUUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 103513 0.74 0.563498
Target:  5'- gCGGACggcgGCGUCCGCGGCAuccGCCGc -3'
miRNA:   3'- -GUCUGag--CGCAGGCGCUGUuucUGGC- -5'
23643 3' -54.6 NC_005261.1 + 104325 0.74 0.563498
Target:  5'- gCGGACgcgCGCGUCCaGCGGCc--GGCCGu -3'
miRNA:   3'- -GUCUGa--GCGCAGG-CGCUGuuuCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 135016 0.74 0.573646
Target:  5'- gCGGGCccgcaCGCGgCCGCGGCGgcGAGGCCGa -3'
miRNA:   3'- -GUCUGa----GCGCaGGCGCUGU--UUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 91120 0.74 0.583836
Target:  5'- -cGuCUCGCGcgCCGCGGCcGAGGCCu -3'
miRNA:   3'- guCuGAGCGCa-GGCGCUGuUUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 81733 0.73 0.624877
Target:  5'- -cGGCaCGCGUCCGCaGugGAAGACgGa -3'
miRNA:   3'- guCUGaGCGCAGGCG-CugUUUCUGgC- -5'
23643 3' -54.6 NC_005261.1 + 121131 0.73 0.624877
Target:  5'- gAGGCgcgggCGCGagCGCGAguAGGACCGg -3'
miRNA:   3'- gUCUGa----GCGCagGCGCUguUUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 46235 0.73 0.63517
Target:  5'- uGGACgagCGCGUcgcaggCCGCGGCGgcGGCCGc -3'
miRNA:   3'- gUCUGa--GCGCA------GGCGCUGUuuCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 37788 0.73 0.644432
Target:  5'- aCGGACUcccCGCGUgCGUGACGAcgcuggaGGACCa -3'
miRNA:   3'- -GUCUGA---GCGCAgGCGCUGUU-------UCUGGc -5'
23643 3' -54.6 NC_005261.1 + 14757 0.73 0.645461
Target:  5'- -cGGCgcCGCG-CCGCGACAGggGGGCCGc -3'
miRNA:   3'- guCUGa-GCGCaGGCGCUGUU--UCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 98285 0.72 0.655741
Target:  5'- -cGACgcccggCGCGUCCGCGGCcucGGGGGCgGg -3'
miRNA:   3'- guCUGa-----GCGCAGGCGCUG---UUUCUGgC- -5'
23643 3' -54.6 NC_005261.1 + 48328 0.72 0.655741
Target:  5'- cCGGGCUCGgGggcgCgCGCGGCG-AGGCCGa -3'
miRNA:   3'- -GUCUGAGCgCa---G-GCGCUGUuUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 95079 0.72 0.686433
Target:  5'- --cGCgagCGCGaCCGCGACGgcGAGGCCGa -3'
miRNA:   3'- gucUGa--GCGCaGGCGCUGU--UUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 86490 0.71 0.706681
Target:  5'- cCGGGCcggCGCcuGUCUGCGGCAGGGGCUu -3'
miRNA:   3'- -GUCUGa--GCG--CAGGCGCUGUUUCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.