miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23643 3' -54.6 NC_005261.1 + 84966 0.71 0.706681
Target:  5'- gAGGCgucgggCGCGUCCGCGAUgc--GCCGg -3'
miRNA:   3'- gUCUGa-----GCGCAGGCGCUGuuucUGGC- -5'
23643 3' -54.6 NC_005261.1 + 2733 0.71 0.716714
Target:  5'- -cGACUUGCGcuugcgCCGCGGC--GGGCCGu -3'
miRNA:   3'- guCUGAGCGCa-----GGCGCUGuuUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 125966 0.71 0.726674
Target:  5'- gCAGcACuUCGC-UCgGCGACGGGGGCCGc -3'
miRNA:   3'- -GUC-UG-AGCGcAGgCGCUGUUUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 121820 0.71 0.726674
Target:  5'- uGGGCUCuGCGggccgCCGCGGCGgcGcACCGg -3'
miRNA:   3'- gUCUGAG-CGCa----GGCGCUGUuuC-UGGC- -5'
23643 3' -54.6 NC_005261.1 + 73113 0.71 0.726674
Target:  5'- cCAGAaagccCGCGUCCGCG-CGGuccccGGGCCGg -3'
miRNA:   3'- -GUCUga---GCGCAGGCGCuGUU-----UCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 129690 0.71 0.736551
Target:  5'- -cGACUCGgG-CCGgGGCcGGGGCCGg -3'
miRNA:   3'- guCUGAGCgCaGGCgCUGuUUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 93479 0.71 0.745363
Target:  5'- gGGGCgCGCGUcgcCCGCGGCGAAGcgcgcgaACCGc -3'
miRNA:   3'- gUCUGaGCGCA---GGCGCUGUUUC-------UGGC- -5'
23643 3' -54.6 NC_005261.1 + 135085 0.71 0.756021
Target:  5'- gCGGGCUCGCGgccCgGCGGCGGagcgcgaggcGGACCc -3'
miRNA:   3'- -GUCUGAGCGCa--GgCGCUGUU----------UCUGGc -5'
23643 3' -54.6 NC_005261.1 + 47332 0.71 0.756021
Target:  5'- aAGGCgcgCGCGUCgGCGACGAcgcAGucgaaGCCGa -3'
miRNA:   3'- gUCUGa--GCGCAGgCGCUGUU---UC-----UGGC- -5'
23643 3' -54.6 NC_005261.1 + 70331 0.7 0.765595
Target:  5'- gUAGGCgcaCGCGUCgaGCGGgcCGGGGACCGg -3'
miRNA:   3'- -GUCUGa--GCGCAGg-CGCU--GUUUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 40855 0.7 0.765595
Target:  5'- aAGGg-CGCGUCCGCGA---AGGCCGc -3'
miRNA:   3'- gUCUgaGCGCAGGCGCUguuUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 33767 0.7 0.765595
Target:  5'- --cGCUCGCGgggcCCGCGGCGAgcgcuGGGCCc -3'
miRNA:   3'- gucUGAGCGCa---GGCGCUGUU-----UCUGGc -5'
23643 3' -54.6 NC_005261.1 + 118057 0.7 0.775049
Target:  5'- --cGCUgGCGgCCGCGGCAgcGGCCGc -3'
miRNA:   3'- gucUGAgCGCaGGCGCUGUuuCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 16239 0.7 0.784373
Target:  5'- gGGGCggUCGaCGUCCGCGcCGGGGccGCCGg -3'
miRNA:   3'- gUCUG--AGC-GCAGGCGCuGUUUC--UGGC- -5'
23643 3' -54.6 NC_005261.1 + 74270 0.7 0.784373
Target:  5'- --cGCgcgCGCGUCCGCGGCGGgcGGGgCGg -3'
miRNA:   3'- gucUGa--GCGCAGGCGCUGUU--UCUgGC- -5'
23643 3' -54.6 NC_005261.1 + 29084 0.7 0.793559
Target:  5'- gGGACUCGgGggCCGgGGacuCGGGGACCGa -3'
miRNA:   3'- gUCUGAGCgCa-GGCgCU---GUUUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 118857 0.7 0.802598
Target:  5'- aGGGCggCGCGcCCGCGGCccuGGCCu -3'
miRNA:   3'- gUCUGa-GCGCaGGCGCUGuuuCUGGc -5'
23643 3' -54.6 NC_005261.1 + 14805 0.7 0.802598
Target:  5'- gCAGGCUgCGCacGUCCGCGGCuuauAGaugcGCCGg -3'
miRNA:   3'- -GUCUGA-GCG--CAGGCGCUGuu--UC----UGGC- -5'
23643 3' -54.6 NC_005261.1 + 128815 0.69 0.81148
Target:  5'- gGGGCUCGCG-CUGCGGCu--GACg- -3'
miRNA:   3'- gUCUGAGCGCaGGCGCUGuuuCUGgc -5'
23643 3' -54.6 NC_005261.1 + 95134 0.69 0.81148
Target:  5'- -uGGCUCGCGUCCGCcuGCuggucGCCGg -3'
miRNA:   3'- guCUGAGCGCAGGCGc-UGuuuc-UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.