miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23643 3' -54.6 NC_005261.1 + 131625 0.69 0.820198
Target:  5'- -cGcCUgGCGcCCGCcGCGAGGACCGa -3'
miRNA:   3'- guCuGAgCGCaGGCGcUGUUUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 5507 0.69 0.828743
Target:  5'- gGGGC-CGCGgcagCgGCGGCGAGGccGCCGg -3'
miRNA:   3'- gUCUGaGCGCa---GgCGCUGUUUC--UGGC- -5'
23643 3' -54.6 NC_005261.1 + 108317 0.69 0.828743
Target:  5'- cCAGACggccgcCGCGugcUCCGCGACccgcgccAGGGCCGc -3'
miRNA:   3'- -GUCUGa-----GCGC---AGGCGCUGu------UUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 65416 0.69 0.832111
Target:  5'- gCAG-CUCcaCGUCCGCGGgccccaggaagaaguCAAAGGCCGg -3'
miRNA:   3'- -GUCuGAGc-GCAGGCGCU---------------GUUUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 77879 0.69 0.833784
Target:  5'- cCAGGCUCGCGUCCGcCGucuccucgcugcaGCAggAggugagccagcugcGGGCCGg -3'
miRNA:   3'- -GUCUGAGCGCAGGC-GC-------------UGU--U--------------UCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 37227 0.69 0.836279
Target:  5'- gCGGGCUUGCGcggCGCGGCGcguggacagcgcgGAGACCa -3'
miRNA:   3'- -GUCUGAGCGCag-GCGCUGU-------------UUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 30346 0.69 0.837108
Target:  5'- -cGGC-CGCGcUCGCGGCccuGAAGGCCGg -3'
miRNA:   3'- guCUGaGCGCaGGCGCUG---UUUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 90114 0.69 0.837108
Target:  5'- uGGGCcgaCGCGgcCCGCGGCGAGGGCg- -3'
miRNA:   3'- gUCUGa--GCGCa-GGCGCUGUUUCUGgc -5'
23643 3' -54.6 NC_005261.1 + 72961 0.69 0.837108
Target:  5'- -cGGCUCGCGcccgCCGCcGCGGGGGuCCGc -3'
miRNA:   3'- guCUGAGCGCa---GGCGcUGUUUCU-GGC- -5'
23643 3' -54.6 NC_005261.1 + 67600 0.69 0.837108
Target:  5'- gGGAUUCagcccgaagGCGgacgCCGCGcCAAAGACCa -3'
miRNA:   3'- gUCUGAG---------CGCa---GGCGCuGUUUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 51383 0.69 0.837108
Target:  5'- gCAGGCcgugCGCGaacUCCGCGAgCGGAGcCCGc -3'
miRNA:   3'- -GUCUGa---GCGC---AGGCGCU-GUUUCuGGC- -5'
23643 3' -54.6 NC_005261.1 + 29233 0.69 0.845283
Target:  5'- gCAGGCUacgcCGCGgcgCCGCG-CGAcGGGCCGc -3'
miRNA:   3'- -GUCUGA----GCGCa--GGCGCuGUU-UCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 119124 0.69 0.845283
Target:  5'- gUAGGC-CGCGgCCGCGGCGc-GGCCa -3'
miRNA:   3'- -GUCUGaGCGCaGGCGCUGUuuCUGGc -5'
23643 3' -54.6 NC_005261.1 + 47700 0.69 0.845283
Target:  5'- -cGGCgcCGCGUCgGCGGCGucgGGGGCCu -3'
miRNA:   3'- guCUGa-GCGCAGgCGCUGU---UUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 57480 0.69 0.848499
Target:  5'- aCAGGCUCGaGUcccCCGCGACGGgcacgucccggcggcGGGCCu -3'
miRNA:   3'- -GUCUGAGCgCA---GGCGCUGUU---------------UCUGGc -5'
23643 3' -54.6 NC_005261.1 + 4511 0.69 0.853263
Target:  5'- cCAGucgcGCgcccgCGCGggcgCCGCGGCGAGGgcGCCGg -3'
miRNA:   3'- -GUC----UGa----GCGCa---GGCGCUGUUUC--UGGC- -5'
23643 3' -54.6 NC_005261.1 + 104827 0.69 0.853263
Target:  5'- -cGGCgUCGCGgggCCGCGccACGcGGACCGc -3'
miRNA:   3'- guCUG-AGCGCa--GGCGC--UGUuUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 104507 0.69 0.853263
Target:  5'- gCAGccGCUcCGUGgcggCCGCGACGgcGGCCGc -3'
miRNA:   3'- -GUC--UGA-GCGCa---GGCGCUGUuuCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 95818 0.69 0.853263
Target:  5'- gGGGCUCGCGguccUCGCGGCGcuuguGGGCgGa -3'
miRNA:   3'- gUCUGAGCGCa---GGCGCUGUu----UCUGgC- -5'
23643 3' -54.6 NC_005261.1 + 41101 0.69 0.853263
Target:  5'- -cGACcgCGuCGUCCGCGGC--GGGCCc -3'
miRNA:   3'- guCUGa-GC-GCAGGCGCUGuuUCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.