miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23643 3' -54.6 NC_005261.1 + 126415 0.66 0.940137
Target:  5'- gAGACUuCGCGcgCCGuCGccacguacauaugcGCAAAGGCCa -3'
miRNA:   3'- gUCUGA-GCGCa-GGC-GC--------------UGUUUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 123246 0.66 0.940137
Target:  5'- cCAGGCgcgggccccgcccaUCGC--CCGUGACGAGGugCGg -3'
miRNA:   3'- -GUCUG--------------AGCGcaGGCGCUGUUUCugGC- -5'
23643 3' -54.6 NC_005261.1 + 93927 0.66 0.940137
Target:  5'- gCGGGCUUGCGccgUCCGCGggcgccgccuccggGCGGucGGCCGu -3'
miRNA:   3'- -GUCUGAGCGC---AGGCGC--------------UGUUu-CUGGC- -5'
23643 3' -54.6 NC_005261.1 + 86914 0.66 0.938711
Target:  5'- gCGGACcCGCGUccaccgccgccgCCGCGcgcggcgggcugguCAAAGACCGu -3'
miRNA:   3'- -GUCUGaGCGCA------------GGCGCu-------------GUUUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 115484 0.66 0.936777
Target:  5'- gCGGGCUCG-G-CCGCGGCGgcGcGCCGc -3'
miRNA:   3'- -GUCUGAGCgCaGGCGCUGUuuC-UGGC- -5'
23643 3' -54.6 NC_005261.1 + 71825 0.66 0.936777
Target:  5'- gAGACggGCcacaCCGCGGCGAAGuCCGc -3'
miRNA:   3'- gUCUGagCGca--GGCGCUGUUUCuGGC- -5'
23643 3' -54.6 NC_005261.1 + 94416 0.66 0.936777
Target:  5'- aGGGCgCGaCGUCCGCGGCGccGcCCc -3'
miRNA:   3'- gUCUGaGC-GCAGGCGCUGUuuCuGGc -5'
23643 3' -54.6 NC_005261.1 + 95654 0.66 0.936777
Target:  5'- -cGACgCGCGgcgCCGCGAC--GGGCgCGg -3'
miRNA:   3'- guCUGaGCGCa--GGCGCUGuuUCUG-GC- -5'
23643 3' -54.6 NC_005261.1 + 70118 0.66 0.936777
Target:  5'- -cGcCUCGUG-CC-CGGCAAAGGCCa -3'
miRNA:   3'- guCuGAGCGCaGGcGCUGUUUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 4835 0.66 0.936777
Target:  5'- gCAGGCggcgGCGUCCGCGccgcagccuCAAGGGCgGc -3'
miRNA:   3'- -GUCUGag--CGCAGGCGCu--------GUUUCUGgC- -5'
23643 3' -54.6 NC_005261.1 + 20013 0.66 0.936777
Target:  5'- -uGACcCGCacccGUCCGCGGuCAGcGGGCCGg -3'
miRNA:   3'- guCUGaGCG----CAGGCGCU-GUU-UCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 66471 0.66 0.936777
Target:  5'- cCAGGCgCGCGUCCucGCGguACAgcGAGAgCGg -3'
miRNA:   3'- -GUCUGaGCGCAGG--CGC--UGU--UUCUgGC- -5'
23643 3' -54.6 NC_005261.1 + 69443 0.66 0.936777
Target:  5'- aCGGGCagCGCGgacgagCUGCGGCGcgucgAGGGCCa -3'
miRNA:   3'- -GUCUGa-GCGCa-----GGCGCUGU-----UUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 134738 0.66 0.936287
Target:  5'- cCGGACUcggcgacggcaccCGCGacCCGCGGCGGcauggcGGACCa -3'
miRNA:   3'- -GUCUGA-------------GCGCa-GGCGCUGUU------UCUGGc -5'
23643 3' -54.6 NC_005261.1 + 5430 0.66 0.931772
Target:  5'- gAGACgacCGCGgCCGCGGCGgcGGCa- -3'
miRNA:   3'- gUCUGa--GCGCaGGCGCUGUuuCUGgc -5'
23643 3' -54.6 NC_005261.1 + 97844 0.66 0.931772
Target:  5'- gGGGCg-GCGggcgccgCCGCGGCAGcgcGGCCGg -3'
miRNA:   3'- gUCUGagCGCa------GGCGCUGUUu--CUGGC- -5'
23643 3' -54.6 NC_005261.1 + 62370 0.66 0.931772
Target:  5'- cCAG-CUCGCGcgCCuGCGGCAGcGGcACCGu -3'
miRNA:   3'- -GUCuGAGCGCa-GG-CGCUGUU-UC-UGGC- -5'
23643 3' -54.6 NC_005261.1 + 33026 0.66 0.930742
Target:  5'- gGGGCgccgaugcggaGCGUCCGCGG--AGGGCCa -3'
miRNA:   3'- gUCUGag---------CGCAGGCGCUguUUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 54707 0.66 0.930223
Target:  5'- gCAG-CUCGCGUUuagaaacacgaccgCGCGGCcGAGuCCGa -3'
miRNA:   3'- -GUCuGAGCGCAG--------------GCGCUGuUUCuGGC- -5'
23643 3' -54.6 NC_005261.1 + 118146 0.66 0.929702
Target:  5'- -cGGCUCGCGcagacgcuggccgUCGCGGCGGGGcuuGCCGu -3'
miRNA:   3'- guCUGAGCGCa------------GGCGCUGUUUC---UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.