miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23643 3' -54.6 NC_005261.1 + 63025 0.67 0.928653
Target:  5'- gCGGGCgccgGCGcCCGCGGCGAGGcggucgcgcagcagcGCCGc -3'
miRNA:   3'- -GUCUGag--CGCaGGCGCUGUUUC---------------UGGC- -5'
23643 3' -54.6 NC_005261.1 + 136915 0.67 0.92706
Target:  5'- uGGGCcgCGCGgCCGCGGCGcauguggugguacauGGGCCGc -3'
miRNA:   3'- gUCUGa-GCGCaGGCGCUGUu--------------UCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 98041 0.67 0.926525
Target:  5'- gCGGuACUgGCGgCCGCGgGCGgcGGGACCGc -3'
miRNA:   3'- -GUC-UGAgCGCaGGCGC-UGU--UUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 1099 0.67 0.926525
Target:  5'- -cGGCUCGuCGUCCGagGACGcGGACg- -3'
miRNA:   3'- guCUGAGC-GCAGGCg-CUGUuUCUGgc -5'
23643 3' -54.6 NC_005261.1 + 24415 0.67 0.926525
Target:  5'- gGGGCUCggauccucgguuGCgGUCCGCGGCGAuGGACg- -3'
miRNA:   3'- gUCUGAG------------CG-CAGGCGCUGUU-UCUGgc -5'
23643 3' -54.6 NC_005261.1 + 21772 0.67 0.926525
Target:  5'- cCGGGCgagC-CG-CCGCGGCGcGGGCCGc -3'
miRNA:   3'- -GUCUGa--GcGCaGGCGCUGUuUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 101408 0.67 0.926525
Target:  5'- gCAGcgccGCUUGCGUCa-CGACGucGGCCGc -3'
miRNA:   3'- -GUC----UGAGCGCAGgcGCUGUuuCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 39186 0.67 0.926525
Target:  5'- -cGACUCGCGcCC-CGGCGAGcaGCCGc -3'
miRNA:   3'- guCUGAGCGCaGGcGCUGUUUc-UGGC- -5'
23643 3' -54.6 NC_005261.1 + 127829 0.67 0.926525
Target:  5'- --cGCUCGCGgCCGCGAgCAGcGGACgGg -3'
miRNA:   3'- gucUGAGCGCaGGCGCU-GUU-UCUGgC- -5'
23643 3' -54.6 NC_005261.1 + 72534 0.67 0.921036
Target:  5'- -cGGCUCGC-UgCGCGGCAGGGGaCGg -3'
miRNA:   3'- guCUGAGCGcAgGCGCUGUUUCUgGC- -5'
23643 3' -54.6 NC_005261.1 + 121254 0.67 0.921036
Target:  5'- -cGACUCGgGguccgCCGCaGACGGGGcgGCCGc -3'
miRNA:   3'- guCUGAGCgCa----GGCG-CUGUUUC--UGGC- -5'
23643 3' -54.6 NC_005261.1 + 116492 0.67 0.91589
Target:  5'- gCGGGCgCGCGguauaaagagcgccgCCGCGGCGgcgcGAGGCCc -3'
miRNA:   3'- -GUCUGaGCGCa--------------GGCGCUGU----UUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 29498 0.67 0.915306
Target:  5'- uGGugUaCGCGcgCCGCGACGccauGGCCu -3'
miRNA:   3'- gUCugA-GCGCa-GGCGCUGUuu--CUGGc -5'
23643 3' -54.6 NC_005261.1 + 34207 0.67 0.915306
Target:  5'- gCAGACggCGCGUCggaCGCGgACGcAGACgCGg -3'
miRNA:   3'- -GUCUGa-GCGCAG---GCGC-UGUuUCUG-GC- -5'
23643 3' -54.6 NC_005261.1 + 102564 0.67 0.915306
Target:  5'- gCGGACaccgccUCGcCGUCCGCGuCGgcGGCCu -3'
miRNA:   3'- -GUCUG------AGC-GCAGGCGCuGUuuCUGGc -5'
23643 3' -54.6 NC_005261.1 + 1711 0.67 0.915306
Target:  5'- cCGGuACUCGCG-CgGCGGCAcGGGcACCGc -3'
miRNA:   3'- -GUC-UGAGCGCaGgCGCUGU-UUC-UGGC- -5'
23643 3' -54.6 NC_005261.1 + 103943 0.67 0.915306
Target:  5'- cCAGACgcugcagcggCGCGaCCGCGGCGGccGCCa -3'
miRNA:   3'- -GUCUGa---------GCGCaGGCGCUGUUucUGGc -5'
23643 3' -54.6 NC_005261.1 + 131989 0.67 0.915306
Target:  5'- cCAGGCcuucgcagUCGCGgaCgGCGACAAcuGGGCCGc -3'
miRNA:   3'- -GUCUG--------AGCGCa-GgCGCUGUU--UCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 115204 0.67 0.915306
Target:  5'- cCAGcGCccgUGCGUCCGCGGCGc-GAUCGu -3'
miRNA:   3'- -GUC-UGa--GCGCAGGCGCUGUuuCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 117765 0.67 0.915306
Target:  5'- -cGACUCGgGUCCG-GAUcgGGGCgGg -3'
miRNA:   3'- guCUGAGCgCAGGCgCUGuuUCUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.