miRNA display CGI


Results 61 - 80 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23643 3' -54.6 NC_005261.1 + 92641 0.67 0.909336
Target:  5'- gGGAC-CGgGaCCGgGACcGGGACCGg -3'
miRNA:   3'- gUCUGaGCgCaGGCgCUGuUUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 125723 0.67 0.909336
Target:  5'- gCGGGCUCGgcUGgggCCGCcGCAAggGGGCCGg -3'
miRNA:   3'- -GUCUGAGC--GCa--GGCGcUGUU--UCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 63427 0.67 0.909336
Target:  5'- -cGACUCGcCGUCgC-CGGCGuAGGCCGc -3'
miRNA:   3'- guCUGAGC-GCAG-GcGCUGUuUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 86199 0.67 0.909336
Target:  5'- gCGGGCUcCGCGUCgGCG-CGccGaACCGg -3'
miRNA:   3'- -GUCUGA-GCGCAGgCGCuGUuuC-UGGC- -5'
23643 3' -54.6 NC_005261.1 + 53758 0.67 0.909336
Target:  5'- cCGGACguaCGCcg-CGCGGCAAAcGACCGg -3'
miRNA:   3'- -GUCUGa--GCGcagGCGCUGUUU-CUGGC- -5'
23643 3' -54.6 NC_005261.1 + 101717 0.67 0.909336
Target:  5'- cCAGcuGCgccagCGCGcCCGCGAUcAGGGCCu -3'
miRNA:   3'- -GUC--UGa----GCGCaGGCGCUGuUUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 52413 0.67 0.906881
Target:  5'- gAGGCUaaaguccucgaagGCGUCCGCGuCcAGGGCCa -3'
miRNA:   3'- gUCUGAg------------CGCAGGCGCuGuUUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 49267 0.67 0.903127
Target:  5'- -cGGCgCGCacGUCCGCGAgGAAGGCg- -3'
miRNA:   3'- guCUGaGCG--CAGGCGCUgUUUCUGgc -5'
23643 3' -54.6 NC_005261.1 + 89276 0.67 0.903127
Target:  5'- aCGGGCUgGCGUUCccgGCGGCcgccaacgccGAGGACCu -3'
miRNA:   3'- -GUCUGAgCGCAGG---CGCUG----------UUUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 108177 0.67 0.903127
Target:  5'- aGGGCgCGCGgCCGCGGCuccGGGCgCGa -3'
miRNA:   3'- gUCUGaGCGCaGGCGCUGuu-UCUG-GC- -5'
23643 3' -54.6 NC_005261.1 + 73446 0.67 0.903127
Target:  5'- cCAGGCcggcCGCGUCCGCGuccGCGcgcccccccuGGGCCGc -3'
miRNA:   3'- -GUCUGa---GCGCAGGCGC---UGUu---------UCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 96469 0.67 0.903127
Target:  5'- aAGGC-CGCGcUCCGCGGCuGGGGgUGa -3'
miRNA:   3'- gUCUGaGCGC-AGGCGCUGuUUCUgGC- -5'
23643 3' -54.6 NC_005261.1 + 107728 0.67 0.903127
Target:  5'- gCAGGCggcugCGCcucggCCGCGGgGGGGGCCa -3'
miRNA:   3'- -GUCUGa----GCGca---GGCGCUgUUUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 49478 0.67 0.896681
Target:  5'- gCAGGCcgCGCGgaagCUGCaGCAgagGAGGCCGg -3'
miRNA:   3'- -GUCUGa-GCGCa---GGCGcUGU---UUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 47146 0.67 0.896681
Target:  5'- aCAGcGC-CgGCGUCgGCGGCcGAGACCa -3'
miRNA:   3'- -GUC-UGaG-CGCAGgCGCUGuUUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 67076 0.67 0.896024
Target:  5'- gGGGCUCGCucgggcgGUCCauggcGCGACGcGGugCGg -3'
miRNA:   3'- gUCUGAGCG-------CAGG-----CGCUGUuUCugGC- -5'
23643 3' -54.6 NC_005261.1 + 16769 0.68 0.890003
Target:  5'- cCAG-CUCGuCGUCCGUgggguaGGCGAAGcCCGc -3'
miRNA:   3'- -GUCuGAGC-GCAGGCG------CUGUUUCuGGC- -5'
23643 3' -54.6 NC_005261.1 + 68113 0.68 0.889322
Target:  5'- uCGGGCUggagcugCGCGggCCGCGGCGcggcGACCGc -3'
miRNA:   3'- -GUCUGA-------GCGCa-GGCGCUGUuu--CUGGC- -5'
23643 3' -54.6 NC_005261.1 + 132498 0.68 0.883095
Target:  5'- gGGACgCGCccgaCCGCGACGcGGGCUGg -3'
miRNA:   3'- gUCUGaGCGca--GGCGCUGUuUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 117682 0.68 0.875962
Target:  5'- -cGGC-CGgGcCCGCGGCG-AGGCCGg -3'
miRNA:   3'- guCUGaGCgCaGGCGCUGUuUCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.