miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23643 3' -54.6 NC_005261.1 + 1099 0.67 0.926525
Target:  5'- -cGGCUCGuCGUCCGagGACGcGGACg- -3'
miRNA:   3'- guCUGAGC-GCAGGCg-CUGUuUCUGgc -5'
23643 3' -54.6 NC_005261.1 + 1174 0.74 0.543353
Target:  5'- -cGGCcCGCG-CCGCGGCcGGGGCCGg -3'
miRNA:   3'- guCUGaGCGCaGGCGCUGuUUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 1397 0.68 0.875962
Target:  5'- cCGGGCgcCGCGgCCGCGGCGgcGGCgGg -3'
miRNA:   3'- -GUCUGa-GCGCaGGCGCUGUuuCUGgC- -5'
23643 3' -54.6 NC_005261.1 + 1711 0.67 0.915306
Target:  5'- cCGGuACUCGCG-CgGCGGCAcGGGcACCGc -3'
miRNA:   3'- -GUC-UGAGCGCaGgCGCUGU-UUC-UGGC- -5'
23643 3' -54.6 NC_005261.1 + 2344 0.68 0.868609
Target:  5'- uCGGGgUcCGCGaUCUGCGACAuccAGGCCa -3'
miRNA:   3'- -GUCUgA-GCGC-AGGCGCUGUu--UCUGGc -5'
23643 3' -54.6 NC_005261.1 + 2598 0.66 0.950355
Target:  5'- gCGGAagcCGcCGUCgGCGGCGGGGccGCCGg -3'
miRNA:   3'- -GUCUga-GC-GCAGgCGCUGUUUC--UGGC- -5'
23643 3' -54.6 NC_005261.1 + 2733 0.71 0.716714
Target:  5'- -cGACUUGCGcuugcgCCGCGGC--GGGCCGu -3'
miRNA:   3'- guCUGAGCGCa-----GGCGCUGuuUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 4511 0.69 0.853263
Target:  5'- cCAGucgcGCgcccgCGCGggcgCCGCGGCGAGGgcGCCGg -3'
miRNA:   3'- -GUC----UGa----GCGCa---GGCGCUGUUUC--UGGC- -5'
23643 3' -54.6 NC_005261.1 + 4835 0.66 0.936777
Target:  5'- gCAGGCggcgGCGUCCGCGccgcagccuCAAGGGCgGc -3'
miRNA:   3'- -GUCUGag--CGCAGGCGCu--------GUUUCUGgC- -5'
23643 3' -54.6 NC_005261.1 + 5256 0.66 0.946067
Target:  5'- -cGGCUCGUGcCCGCcgggaGACGccauGGCCGg -3'
miRNA:   3'- guCUGAGCGCaGGCG-----CUGUuu--CUGGC- -5'
23643 3' -54.6 NC_005261.1 + 5430 0.66 0.931772
Target:  5'- gAGACgacCGCGgCCGCGGCGgcGGCa- -3'
miRNA:   3'- gUCUGa--GCGCaGGCGCUGUuuCUGgc -5'
23643 3' -54.6 NC_005261.1 + 5507 0.69 0.828743
Target:  5'- gGGGC-CGCGgcagCgGCGGCGAGGccGCCGg -3'
miRNA:   3'- gUCUGaGCGCa---GgCGCUGUUUC--UGGC- -5'
23643 3' -54.6 NC_005261.1 + 14757 0.73 0.645461
Target:  5'- -cGGCgcCGCG-CCGCGACAGggGGGCCGc -3'
miRNA:   3'- guCUGa-GCGCaGGCGCUGUU--UCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 14805 0.7 0.802598
Target:  5'- gCAGGCUgCGCacGUCCGCGGCuuauAGaugcGCCGg -3'
miRNA:   3'- -GUCUGA-GCG--CAGGCGCUGuu--UC----UGGC- -5'
23643 3' -54.6 NC_005261.1 + 15751 0.66 0.946067
Target:  5'- gCAGGCcgacCGCcucgCCGCGAUAcacAAGGCCGc -3'
miRNA:   3'- -GUCUGa---GCGca--GGCGCUGU---UUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 16239 0.7 0.784373
Target:  5'- gGGGCggUCGaCGUCCGCGcCGGGGccGCCGg -3'
miRNA:   3'- gUCUG--AGC-GCAGGCGCuGUUUC--UGGC- -5'
23643 3' -54.6 NC_005261.1 + 16769 0.68 0.890003
Target:  5'- cCAG-CUCGuCGUCCGUgggguaGGCGAAGcCCGc -3'
miRNA:   3'- -GUCuGAGC-GCAGGCG------CUGUUUCuGGC- -5'
23643 3' -54.6 NC_005261.1 + 20013 0.66 0.936777
Target:  5'- -uGACcCGCacccGUCCGCGGuCAGcGGGCCGg -3'
miRNA:   3'- guCUGaGCG----CAGGCGCU-GUU-UCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 21772 0.67 0.926525
Target:  5'- cCGGGCgagC-CG-CCGCGGCGcGGGCCGc -3'
miRNA:   3'- -GUCUGa--GcGCaGGCGCUGUuUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 23349 0.66 0.941541
Target:  5'- gCAGcGCgCGCGUgucggCCGUGACAAAcGCCGa -3'
miRNA:   3'- -GUC-UGaGCGCA-----GGCGCUGUUUcUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.