miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23643 3' -54.6 NC_005261.1 + 24415 0.67 0.926525
Target:  5'- gGGGCUCggauccucgguuGCgGUCCGCGGCGAuGGACg- -3'
miRNA:   3'- gUCUGAG------------CG-CAGGCGCUGUU-UCUGgc -5'
23643 3' -54.6 NC_005261.1 + 28789 0.77 0.420053
Target:  5'- gCGGgcGCUCGCGgCCGCGGCGGAGGCa- -3'
miRNA:   3'- -GUC--UGAGCGCaGGCGCUGUUUCUGgc -5'
23643 3' -54.6 NC_005261.1 + 29084 0.7 0.793559
Target:  5'- gGGACUCGgGggCCGgGGacuCGGGGACCGa -3'
miRNA:   3'- gUCUGAGCgCa-GGCgCU---GUUUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 29233 0.69 0.845283
Target:  5'- gCAGGCUacgcCGCGgcgCCGCG-CGAcGGGCCGc -3'
miRNA:   3'- -GUCUGA----GCGCa--GGCGCuGUU-UCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 29498 0.67 0.915306
Target:  5'- uGGugUaCGCGcgCCGCGACGccauGGCCu -3'
miRNA:   3'- gUCugA-GCGCa-GGCGCUGUuu--CUGGc -5'
23643 3' -54.6 NC_005261.1 + 30346 0.69 0.837108
Target:  5'- -cGGC-CGCGcUCGCGGCccuGAAGGCCGg -3'
miRNA:   3'- guCUGaGCGCaGGCGCUG---UUUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 33026 0.66 0.930742
Target:  5'- gGGGCgccgaugcggaGCGUCCGCGG--AGGGCCa -3'
miRNA:   3'- gUCUGag---------CGCAGGCGCUguUUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 33767 0.7 0.765595
Target:  5'- --cGCUCGCGgggcCCGCGGCGAgcgcuGGGCCc -3'
miRNA:   3'- gucUGAGCGCa---GGCGCUGUU-----UCUGGc -5'
23643 3' -54.6 NC_005261.1 + 34207 0.67 0.915306
Target:  5'- gCAGACggCGCGUCggaCGCGgACGcAGACgCGg -3'
miRNA:   3'- -GUCUGa-GCGCAG---GCGC-UGUuUCUG-GC- -5'
23643 3' -54.6 NC_005261.1 + 34364 0.66 0.950355
Target:  5'- cCGGGCgccgCGCGgcgCCGCG-CGcAGACgCGg -3'
miRNA:   3'- -GUCUGa---GCGCa--GGCGCuGUuUCUG-GC- -5'
23643 3' -54.6 NC_005261.1 + 37227 0.69 0.836279
Target:  5'- gCGGGCUUGCGcggCGCGGCGcguggacagcgcgGAGACCa -3'
miRNA:   3'- -GUCUGAGCGCag-GCGCUGU-------------UUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 37788 0.73 0.644432
Target:  5'- aCGGACUcccCGCGUgCGUGACGAcgcuggaGGACCa -3'
miRNA:   3'- -GUCUGA---GCGCAgGCGCUGUU-------UCUGGc -5'
23643 3' -54.6 NC_005261.1 + 39186 0.67 0.926525
Target:  5'- -cGACUCGCGcCC-CGGCGAGcaGCCGc -3'
miRNA:   3'- guCUGAGCGCaGGcGCUGUUUc-UGGC- -5'
23643 3' -54.6 NC_005261.1 + 40855 0.7 0.765595
Target:  5'- aAGGg-CGCGUCCGCGA---AGGCCGc -3'
miRNA:   3'- gUCUgaGCGCAGGCGCUguuUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 41101 0.69 0.853263
Target:  5'- -cGACcgCGuCGUCCGCGGC--GGGCCc -3'
miRNA:   3'- guCUGa-GC-GCAGGCGCUGuuUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 43912 0.66 0.950355
Target:  5'- aGGGCaUGCGgcacaUCgGCGACAucucgGAGACCGu -3'
miRNA:   3'- gUCUGaGCGC-----AGgCGCUGU-----UUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 46235 0.73 0.63517
Target:  5'- uGGACgagCGCGUcgcaggCCGCGGCGgcGGCCGc -3'
miRNA:   3'- gUCUGa--GCGCA------GGCGCUGUuuCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 47146 0.67 0.896681
Target:  5'- aCAGcGC-CgGCGUCgGCGGCcGAGACCa -3'
miRNA:   3'- -GUC-UGaG-CGCAGgCGCUGuUUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 47332 0.71 0.756021
Target:  5'- aAGGCgcgCGCGUCgGCGACGAcgcAGucgaaGCCGa -3'
miRNA:   3'- gUCUGa--GCGCAGgCGCUGUU---UC-----UGGC- -5'
23643 3' -54.6 NC_005261.1 + 47700 0.69 0.845283
Target:  5'- -cGGCgcCGCGUCgGCGGCGucgGGGGCCu -3'
miRNA:   3'- guCUGa-GCGCAGgCGCUGU---UUCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.