miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23643 3' -54.6 NC_005261.1 + 48328 0.72 0.655741
Target:  5'- cCGGGCUCGgGggcgCgCGCGGCG-AGGCCGa -3'
miRNA:   3'- -GUCUGAGCgCa---G-GCGCUGUuUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 48437 0.66 0.950355
Target:  5'- aCAG-CUCGCgGUgCGUGGCGc-GGCCGg -3'
miRNA:   3'- -GUCuGAGCG-CAgGCGCUGUuuCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 49267 0.67 0.903127
Target:  5'- -cGGCgCGCacGUCCGCGAgGAAGGCg- -3'
miRNA:   3'- guCUGaGCG--CAGGCGCUgUUUCUGgc -5'
23643 3' -54.6 NC_005261.1 + 49478 0.67 0.896681
Target:  5'- gCAGGCcgCGCGgaagCUGCaGCAgagGAGGCCGg -3'
miRNA:   3'- -GUCUGa-GCGCa---GGCGcUGU---UUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 50481 0.74 0.543353
Target:  5'- --cGCUCGCGUCCGCGGC---GGCCc -3'
miRNA:   3'- gucUGAGCGCAGGCGCUGuuuCUGGc -5'
23643 3' -54.6 NC_005261.1 + 51383 0.69 0.837108
Target:  5'- gCAGGCcgugCGCGaacUCCGCGAgCGGAGcCCGc -3'
miRNA:   3'- -GUCUGa---GCGC---AGGCGCU-GUUUCuGGC- -5'
23643 3' -54.6 NC_005261.1 + 52413 0.67 0.906881
Target:  5'- gAGGCUaaaguccucgaagGCGUCCGCGuCcAGGGCCa -3'
miRNA:   3'- gUCUGAg------------CGCAGGCGCuGuUUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 53758 0.67 0.909336
Target:  5'- cCGGACguaCGCcg-CGCGGCAAAcGACCGg -3'
miRNA:   3'- -GUCUGa--GCGcagGCGCUGUUU-CUGGC- -5'
23643 3' -54.6 NC_005261.1 + 54380 0.66 0.950355
Target:  5'- -cGGCUCgggGCGcCCGCGA---AGGCCGu -3'
miRNA:   3'- guCUGAG---CGCaGGCGCUguuUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 54707 0.66 0.930223
Target:  5'- gCAG-CUCGCGUUuagaaacacgaccgCGCGGCcGAGuCCGa -3'
miRNA:   3'- -GUCuGAGCGCAG--------------GCGCUGuUUCuGGC- -5'
23643 3' -54.6 NC_005261.1 + 55089 1.09 0.003735
Target:  5'- gCAGACUCGCGUCCGCGACAAAGACCGg -3'
miRNA:   3'- -GUCUGAGCGCAGGCGCUGUUUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 57480 0.69 0.848499
Target:  5'- aCAGGCUCGaGUcccCCGCGACGGgcacgucccggcggcGGGCCu -3'
miRNA:   3'- -GUCUGAGCgCA---GGCGCUGUU---------------UCUGGc -5'
23643 3' -54.6 NC_005261.1 + 58089 0.66 0.941541
Target:  5'- aGGGCcCGCGUCCucggGCGGCAccaGCCGc -3'
miRNA:   3'- gUCUGaGCGCAGG----CGCUGUuucUGGC- -5'
23643 3' -54.6 NC_005261.1 + 58962 0.69 0.853263
Target:  5'- gCAGcgcCUCgGCGcCCGCGuCGAAGGCCu -3'
miRNA:   3'- -GUCu--GAG-CGCaGGCGCuGUUUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 60175 0.66 0.950355
Target:  5'- uGGAagCGCGUcugcgCCGCGGCGGAGAaguCCGc -3'
miRNA:   3'- gUCUgaGCGCA-----GGCGCUGUUUCU---GGC- -5'
23643 3' -54.6 NC_005261.1 + 62370 0.66 0.931772
Target:  5'- cCAG-CUCGCGcgCCuGCGGCAGcGGcACCGu -3'
miRNA:   3'- -GUCuGAGCGCa-GG-CGCUGUU-UC-UGGC- -5'
23643 3' -54.6 NC_005261.1 + 63025 0.67 0.928653
Target:  5'- gCGGGCgccgGCGcCCGCGGCGAGGcggucgcgcagcagcGCCGc -3'
miRNA:   3'- -GUCUGag--CGCaGGCGCUGUUUC---------------UGGC- -5'
23643 3' -54.6 NC_005261.1 + 63427 0.67 0.909336
Target:  5'- -cGACUCGcCGUCgC-CGGCGuAGGCCGc -3'
miRNA:   3'- guCUGAGC-GCAG-GcGCUGUuUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 63733 0.66 0.950355
Target:  5'- -cGGCgugCGCauggCCGCGGCGGcguAGGCCGc -3'
miRNA:   3'- guCUGa--GCGca--GGCGCUGUU---UCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 65416 0.69 0.832111
Target:  5'- gCAG-CUCcaCGUCCGCGGgccccaggaagaaguCAAAGGCCGg -3'
miRNA:   3'- -GUCuGAGc-GCAGGCGCU---------------GUUUCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.